Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241731g00013 ATGCATAATAACTTGTTCCTTTCATTATGTTTGATTGCCATTATACCAATCTTGAAAGCTAATAATATCTTAGAGGATACAACATACGACGTGAAAGAATATAGCAAGACATTTGATGAGGATTATTGGAAGGAAAGAGCGGCAATTGCCTACAATCATAGCAGAGAAGCATATTTTCCTAACCCATACGACATCGCTGGAAACGTCAGTTCATCTGTTTTAGAAGACATAGATGGCAACAAGCATGTGAGAAGGAGCATGATGGGTAAAAATGCAAAACTCCCATGCGTGGCAAGCAACCCCATTGATAGATGTTGGAGATGTGATCCCAATTGGGCAAAATACCGTCAAAAGCTTGCAAATTGTGTTATGGGTTTTGGAAAAAACACTATTGGAGGAAGAAATGGTCCAATCTATGAAGTTACGGATCCTTCAGACAATGACATGGTTAATCCAAAACCAGGTACCCTTCGCTATGCAGTGACAAGAAATGGACCCTTGTGGATTACCTTTGCACGCAGCATGATCATTAGACTCAACCAAGAACTCATAATGACGAGTGACAAAACCATTGATGGAAGGGGAGTTGATGTGTACATTACTAGGGGTTCAGGCATCACCATCCAATACGTGAGGAATGTGATCATTCATGGGATTAAGATTTATCACATTGTTCAAGGTAGTGGTGGATATATTAGGGATTCTGAGACCCATTTTGGTAAGAGGGTTTTCACTGAAGGTGATGGAATCTCCATTTTTGGCGCCAGCAATGTTTGGATTGATCATGTTTCTATGAAGAAGTCCACTGATGGTCTCATTGATGCCATCATGGGATCCACTGCTATCACCATTTCCAATAGTCATTTCACAGACCAAAATCACGTTATGCTGTTCGGTGGGAGGGATGAGCACGTAATTGATAAGATAATGCAAGTAACAGTAGCTTTCAACCATTTTGGTAAGAGATTGCTCCAAAGAATGCCAAGGTGCAGACATGGATTTTTCCATCTGGTTAACAATGACTATACACATTGGCAAATGTATGCCATTGGTGGTAACATGAATCCAACCATTATTAGTGAGGGTAATCGCTTTATGGCTCCAGATAGCGTTCATCTTAAAGAGGTAACAAAGAGAGTCAACTCAAACATTGCAGAATGGAGAAGATGGCAATGGAGATCAATTAACGACGAGTTAAAAAATGGGGCATTTTTCGTAGAATCTGGACCTGAATGGGTGAACTGGGCATTCTCAAGGGAAGACAAGATTACACCAAAGCCTGCAACTTATGTAGGAGAACTTACTCGCTCTGCTGGCGCCCTTAGATGTAGAGTTGGTAAACCTTGTTAG 1350 0.4081 MHNNLFLSLCLIAIIPILKANNILEDTTYDVKEYSKTFDEDYWKERAAIAYNHSREAYFPNPYDIAGNVSSSVLEDIDGNKHVRRSMMGKNAKLPCVASNPIDRCWRCDPNWAKYRQKLANCVMGFGKNTIGGRNGPIYEVTDPSDNDMVNPKPGTLRYAVTRNGPLWITFARSMIIRLNQELIMTSDKTIDGRGVDVYITRGSGITIQYVRNVIIHGIKIYHIVQGSGGYIRDSETHFGKRVFTEGDGISIFGASNVWIDHVSMKKSTDGLIDAIMGSTAITISNSHFTDQNHVMLFGGRDEHVIDKIMQVTVAFNHFGKRLLQRMPRCRHGFFHLVNNDYTHWQMYAIGGNMNPTIISEGNRFMAPDSVHLKEVTKRVNSNIAEWRRWQWRSINDELKNGAFFVESGPEWVNWAFSREDKITPKPATYVGELTRSAGALRCRVGKPC 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241731g00013 449 SMART amb_all 174 371 IPR002022 -
Stsc241731g00013 449 PANTHER PECTATE LYASE 18-RELATED 50 447 IPR045032 GO:0030570
Stsc241731g00013 449 SUPERFAMILY Pectin lyase-like 100 440 IPR011050 -
Stsc241731g00013 449 Pfam Pectate lyase 184 365 IPR002022 -
Stsc241731g00013 449 PRINTS Pollen allergen Amb family signature 390 414 IPR018082 -
Stsc241731g00013 449 PRINTS Pollen allergen Amb family signature 122 139 IPR018082 -
Stsc241731g00013 449 PRINTS Pollen allergen Amb family signature 420 443 IPR018082 -
Stsc241731g00013 449 PRINTS Pollen allergen Amb family signature 326 345 IPR018082 -
Stsc241731g00013 449 PRINTS Pollen allergen Amb family signature 182 198 IPR018082 -
Stsc241731g00013 449 PRINTS Pollen allergen Amb family signature 246 267 IPR018082 -
Stsc241731g00013 449 PRINTS Pollen allergen Amb family signature 348 367 IPR018082 -
Stsc241731g00013 449 PRINTS Pollen allergen Amb family signature 146 171 IPR018082 -
Stsc241731g00013 449 Pfam Pectate lyase, N terminus 38 86 IPR007524 GO:0030570
Stsc241731g00013 449 Gene3D - 99 442 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241731g00013 Stsc-Chr241731 76096 78178 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241731g00013 5 449 Polysaccharide Lyase AT1G14420 54.212 1.18e-178 506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241731g00013 K01728 - gmx:100796307 609.757