Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241731g00002 ATGTTCGGAATGCAAGAAAGAACCACGCAGCTCCAACTCCACGATATCGGTTCGTCCCTATCAAACCTCATACTGTCAAGCAGCACAAACACGCTTGACTCAATTTTCTGCCATTGTCCTGACCCCAATCCAACTTGTACCCCTAACACCATAATAGGCTCTTCAGGTTTCGAACCTCTGGGTTCCTCTGTATACCTTCGCCAGAGAGACATCCTTCAGAAATTCTACCAGGAAAACAAGGTCAACAACAGGCCTTATGTGCCAACATCCATGCTCACTCCATCAATGACCACTTCTTCCTCTTTCTTGAACCCCTGCAAGAAGAAGCTCTACAGAGGAGTGAGGCAGAGGCACTGGGGAAAATGGGTGGCGGAGATTAGGCTCCCTCAGAACAGAATGAGAGTGTGGCTGGGAACCTACGACACTGCTGAAGCTGCTGCTTATGCCTATGATCGTGCGGCTTACAAGCTCCGTGGAGAATACGCGCGCTTGAATTTCCCCAACCTCAAGGATCCAACCAAGCTGGGATTCGGAGACTCCACCAGGTTGAATGCTCTCAAGACCACTGTGGATGCAAAGATTCAAGCCATATGCCAGAAGGTCAAGAGGGAGAGAGCCAAGAAGAATGCAGCCAAGAAGAAGCTCAAATCAAATGCTGCCGGAGACGCACCTAGTAAGAGACAACAAACCGAGAACTCCAATAAGAATGACAAGATCAGCTCAGCTTCTTGTTCTTCTTGTTCCTCGCTGTCGCCGCCGCGGCCTGCTAATTATGATGATTGGGAAAAGGAGTTGCTCTCTCCGGCTGTTTCCGACGATGGGGTGCCGGCTTCTGTTTCAATGTTTCTGACGGATGAATCCATGGAATTCGATGATTGTTCCCTTGCGAGGATGCCATCCTTCGACCCTGAGTTGATTTGGGAAGTTCTGGCCAATTAG 939 0.4952 MFGMQERTTQLQLHDIGSSLSNLILSSSTNTLDSIFCHCPDPNPTCTPNTIIGSSGFEPLGSSVYLRQRDILQKFYQENKVNNRPYVPTSMLTPSMTTSSSFLNPCKKKLYRGVRQRHWGKWVAEIRLPQNRMRVWLGTYDTAEAAAYAYDRAAYKLRGEYARLNFPNLKDPTKLGFGDSTRLNALKTTVDAKIQAICQKVKRERAKKNAAKKKLKSNAAGDAPSKRQQTENSNKNDKISSASCSSCSSLSPPRPANYDDWEKELLSPAVSDDGVPASVSMFLTDESMEFDDCSLARMPSFDPELIWEVLAN 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241731g00002 312 MobiDBLite consensus disorder prediction 222 253 - -
Stsc241731g00002 312 Gene3D AP2/ERF domain 110 168 IPR036955 GO:0003700|GO:0006355
Stsc241731g00002 312 Coils Coil 198 218 - -
Stsc241731g00002 312 MobiDBLite consensus disorder prediction 205 259 - -
Stsc241731g00002 312 FunFam Ethylene-responsive transcription factor 2 109 168 - -
Stsc241731g00002 312 CDD AP2 109 169 IPR001471 GO:0003700|GO:0006355
Stsc241731g00002 312 SMART rav1_2 110 173 IPR001471 GO:0003700|GO:0006355
Stsc241731g00002 312 ProSiteProfiles AP2/ERF domain profile. 110 167 IPR001471 GO:0003700|GO:0006355
Stsc241731g00002 312 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 26 310 - -
Stsc241731g00002 312 PRINTS Ethylene responsive element binding protein signature 133 149 IPR001471 GO:0003700|GO:0006355
Stsc241731g00002 312 PRINTS Ethylene responsive element binding protein signature 111 122 IPR001471 GO:0003700|GO:0006355
Stsc241731g00002 312 Pfam AP2 domain 111 160 IPR001471 GO:0003700|GO:0006355
Stsc241731g00002 312 SUPERFAMILY DNA-binding domain 110 167 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241731g00002 Stsc-Chr241731 11405 12343 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241731g00002 12 312 AP2-EREBP Transcription Factor Family AT1G64380 47.401 3.19e-67 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc241731g00002 AP2 6.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241731g00002 - - vvo:131647084 328.561