Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241730g00016 ATGCACAGTCTTCAGAAGCAACGTCGTAATTTTTTTCATAATGCAATTAAGATTATTACATCTTCTCCTTCATCATTATTAGCCTCCAATAACATTTCTTCCACTGCCGGCAAGGTCATTTCTTGCAAAGCTGCAGTTGCATGGGAAGCAGGGAAGCCATTGGTGATTGAAGATGTAGAGGTTGCTCCACCACAAGCCAAAGAAGTGAGGATTAACATCAAATATTCCTCACTTTGCCACACAGATCTATACTTCTGGGAATCTAAGTGCCTACCACCATCATTTCCACGGATTCTAGGCCACGAAGCATCTGGGGTTGTGGAGAGTGTAGGTGATGGTGTATCAGATCTGAAGCCAGGTGATCATGTGCTTCCGCTATTCACCGGAGAGTGTGGGGAATGCCGACACTGCAAAAGTGAAGAAAGCAACATGTGTGAAGTGTTGCGAATAAACCCATCAAGTGAGGTTATGATAAGTGATGGCAAATCAAGGTTCTCTACCATGAAAGGCAAGAACCCTAGAAATATAAGTCACTTCCTTGGCACATCCACCTTCAGCCAATACACAGTTGTTCATTCAGGAAGTGTTGTTAAAATAAATCCCACACTTCCTTTGGACAAGGCTTGTCTCCTCAGTTGTGGCATCTCAACAGGGATAGGATCAGTTCTCAATGTTGCCAAACCGAAGAAGGGTGCTTCAATAGCAATATTTGGGCTTGGAGCTGTTGGACTCGCTGCAGCTGAAGGTGCAAGAATTGGTGGAGCATCCAGGATAATTGGAATTGACATGAATCCTAACAAAATTAAGTATGCCAAGAATTTTGGACTAACTGACTTCATAAATCCAGAGGAACATGAAAAGCCAGTTCATGAGGTCCTGAAAGAGATGACAAATGGTGGAGTTGATAGGTGCATAGAATGCACTGGAAACATTAATGTCTTAATGTCTGCAATGGAAGCTCTCCATGATGGATGGGGTGTTGTTGTACTTGTTGGAGTACCTAGTTCTGATGCAGTTTTCAAGACGAATCCCTTCAATTTTCTTAATGGAAAGACAATTACAGGCACATCATTTGGGAACTACAAGCCTAAAACCGGCCTTCCAACACTTGTTGATATGTTCATGAACAATAAATTGGAGCTGGACAAGTTTATAACTCACAGAGTTCCTCTCTCTGAAATCAATAAAGCCTTTGATTACATGATCAAAGGAGAGGGCCTAAGGACAATCATAGACATGAAAAACTAG 1248 0.4207 MHSLQKQRRNFFHNAIKIITSSPSSLLASNNISSTAGKVISCKAAVAWEAGKPLVIEDVEVAPPQAKEVRINIKYSSLCHTDLYFWESKCLPPSFPRILGHEASGVVESVGDGVSDLKPGDHVLPLFTGECGECRHCKSEESNMCEVLRINPSSEVMISDGKSRFSTMKGKNPRNISHFLGTSTFSQYTVVHSGSVVKINPTLPLDKACLLSCGISTGIGSVLNVAKPKKGASIAIFGLGAVGLAAAEGARIGGASRIIGIDMNPNKIKYAKNFGLTDFINPEEHEKPVHEVLKEMTNGGVDRCIECTGNINVLMSAMEALHDGWGVVVLVGVPSSDAVFKTNPFNFLNGKTITGTSFGNYKPKTGLPTLVDMFMNNKLELDKFITHRVPLSEINKAFDYMIKGEGLRTIIDMKN 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241730g00016 415 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 100 114 IPR002328 GO:0008270|GO:0016491
Stsc241730g00016 415 SUPERFAMILY GroES-like 364 411 IPR011032 -
Stsc241730g00016 415 SUPERFAMILY GroES-like 35 221 IPR011032 -
Stsc241730g00016 415 FunFam Alcohol dehydrogenase class-P 218 356 - -
Stsc241730g00016 415 CDD alcohol_DH_plants 40 412 - -
Stsc241730g00016 415 Gene3D - 218 356 - -
Stsc241730g00016 415 Pfam Zinc-binding dehydrogenase 241 361 IPR013149 -
Stsc241730g00016 415 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 203 378 IPR036291 -
Stsc241730g00016 415 Pfam Alcohol dehydrogenase GroES-like domain 67 199 IPR013154 -
Stsc241730g00016 415 PANTHER ALCOHOL DEHYDROGENASE 37 411 - -
Stsc241730g00016 415 SMART PKS_ER_names_mod 51 411 IPR020843 GO:0016491
Stsc241730g00016 415 Gene3D - 45 408 - -
Stsc241730g00016 415 FunFam Alcohol dehydrogenase 6 45 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241730g00016 Stsc-Chr241730 123065 130180 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241730g00016 68 415 Monolignol Biosynthesis Gene Families AT1G72680 23.362 2.16e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241730g00016 K18857 - nnu:104602143 551.592