Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241730g00014 ATGGAGACTCCTCTTCCATGGCTACAGTCTCCGTTGCAGTTTGTTGACGCCGTTTTCGAAGATGTGGATCTTCCTTACTTGCCAGTTGCCACTCCGCAAGTTGATTTGGGGGAATCCATACCCACAACACACCGAGTACTGAGTAATGCCCATTGCGCTGCTCTCCAGTCACCAACTGCTGTTGCATGGGAAGCAGGGAAACCTTTGGTGATAGAAAAAGTGGAAGTGGCTCCACCACAGGCCATGGAAGTGAGAATCAAGGTCAAATATACCTCACTCTGCCATACTGATCTCTACTTCTGGGAGGCCAAGGGACAAACTCCACTGTTTCCTCGGATTTTCGGTCACGAGGCTGCTGGAATTGTGGAGAGTGTTGGAGAAGGAGTCACAGACCTACAGGTTGGTGATCATGTGCTTCCAGTATTCACCGGGGAATGCGGCGAATGTGCTCATTGCAAATCCGAGGAAAGCAACATGTGTGACCTCCTGAGAATTGATACAGAGAGAGGAGTCATGCACAGTGATGGAAAGAGCAGATTTTCAATTAATGGTACGCCGATAAACCACTTTGTTGGCACATCAACGTTTAGTGAATACACTGTGATACATTCCGGATGCTTGGCAAAGCTCAATCCACTGGCACCAATGGATAAAGTATGTGTCCTCAGTTGTGGCATTTCAACAGGATTGGGAGCAACTTTGAATGTAGCGAAACCAAAGAAGGGTTCTACAGTAGCAGTGTTTGGCCTTGGAGCTGTTGGACTTGCTGCTGCTGAGGGTGCCAGAATTGCTGGTGCATCTAGAATTATTGGAATTGATTTGAACCCAAACAGGTTTGAAGAAGCCAAAAAGTTTGGAATAACTGAGTTTGTGAATCCAAAGGATTATGATAGACCAGTTCAACAGGTTATTGCTGAAATGACGAACGGAGGAGTTGACCGGAGCATAGAGTGCACTGGAAACATCAATGCGATGATATCTGCTTTTGAATGTGTTCATGATGGATGGGGTGTTGCTGTGCTTGTTGGAGTTCCAACTAAGGATGCAATTTTCATGACCAAGCCCATCAATTTGCTCAATGAAAGAACACTAAAAGGAACTTTCTTTGGAAATTATAAGCCCAGGACGGATCTTCCATCTGTGGTTGAGATGTATATGAACAAGAAATTGGAACTGGACAAGTTCATAACCCATAGAGTTCCTTTCTCTGATATCAACAAGGCATTTGATCTAATGTTGAGAGGGGAGGGACTAAGGTGCATCATTAGCATGGAAGACTAG 1281 0.4528 METPLPWLQSPLQFVDAVFEDVDLPYLPVATPQVDLGESIPTTHRVLSNAHCAALQSPTAVAWEAGKPLVIEKVEVAPPQAMEVRIKVKYTSLCHTDLYFWEAKGQTPLFPRIFGHEAAGIVESVGEGVTDLQVGDHVLPVFTGECGECAHCKSEESNMCDLLRIDTERGVMHSDGKSRFSINGTPINHFVGTSTFSEYTVIHSGCLAKLNPLAPMDKVCVLSCGISTGLGATLNVAKPKKGSTVAVFGLGAVGLAAAEGARIAGASRIIGIDLNPNRFEEAKKFGITEFVNPKDYDRPVQQVIAEMTNGGVDRSIECTGNINAMISAFECVHDGWGVAVLVGVPTKDAIFMTKPINLLNERTLKGTFFGNYKPRTDLPSVVEMYMNKKLELDKFITHRVPFSDINKAFDLMLRGEGLRCIISMED 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241730g00014 426 Pfam Zinc-binding dehydrogenase 252 380 IPR013149 -
Stsc241730g00014 426 FunFam alcohol dehydrogenase 1-like isoform X1 65 228 - -
Stsc241730g00014 426 FunFam Alcohol dehydrogenase class-P 229 367 - -
Stsc241730g00014 426 Gene3D - 229 367 - -
Stsc241730g00014 426 CDD alcohol_DH_plants 60 422 - -
Stsc241730g00014 426 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 215 389 IPR036291 -
Stsc241730g00014 426 SUPERFAMILY GroES-like 374 422 IPR011032 -
Stsc241730g00014 426 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 115 129 IPR002328 GO:0008270|GO:0016491
Stsc241730g00014 426 Pfam Alcohol dehydrogenase GroES-like domain 83 207 IPR013154 -
Stsc241730g00014 426 PANTHER ALCOHOL DEHYDROGENASE 57 422 - -
Stsc241730g00014 426 Gene3D - 65 416 - -
Stsc241730g00014 426 SUPERFAMILY GroES-like 56 232 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241730g00014 Stsc-Chr241730 114856 121330 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241730g00014 56 180 Monolignol Biosynthesis Gene Families AT4G37970 30.303 4.13e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241730g00014 K18857 - zju:107426564 668.307