Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241730g00012 ATGGCTGGAGTTTTGAGGCAAATGTCAATGCCAATGCCAATGCCGAGGCAATCCTTGAGCAACCACCACCACCAAATGCCGAGGCAATCTCTCACTCCACGCCCTCTCTTCTTCTTCTTCTTACTCCTTCTCACACTAACAAACCCCACTCTTTCTTCTTCTTCTCCAAGCAATAATGAAGCTCTAGCTTTGCTTTCATGGCTCAAAACCGGTTCCTCCAAAACTCCCTCACCTCTCTCAGACTGGAACCTTCTAGACCCTACACCATGCAACTGGTCCTGCGTCAAATGCTCCGTAGACAGCCACGTCATCGAGCTAAACATCCAAGCAATACAGTTAGCCCTTCCTTTCCCATCAAACCTCTCTTCATCCCTTCCTTTCCTTCAAAAACTCGTCATCTCCGACGCCAATCTCACCGGTGCGATCCCCCGGGATATCGGACACTTCGCCTCGCTTACCGTCCTTGATCTCAGCTCAAATTCTCTTGTTGGTTCCATTCCTTCCACCATTGGAAACCTCAAGAACCTCCAAGACTTGAGCTTAAACTCAAACCAGCTCACAGGTTCAATCCCCAAGGAGATTGGTGACTGTGTTAGCCTCAAGAATCTTAATGTTTTCGACAATAGCCTCAGCGGCGACCTTCCGGCCGAGCTCGGAAGCCTCTCGAATCTCAAAATCATAAGAGCTGGAGGGAACAAGGACATTGTAGGGAAGATTCCGGAATCTCTTGGTAACTGCAAGAATCTAACCGTTTTAGGCCTTGCAGATACCAAGGTTTCGGGTTCGTTACCTTCTTCGTTGGGAAAACTCGCCATGCTTCAAACTATCTCAATCTATAGCACTATGCTTTCCGGTGAGATTCCGGCTGAGATCGGAAACTGTTCTGAGCTGGTGAACTTGTTTCTTTACGAGAACGATCTCTCCGGTTCCATTCCGAGGGAGTTAGGGAAGCTGCAGAAGCTTGAAAAGATGCTGCTATGGCAGAACAGTTTCGTTGGAAGCATACCTGAAGAGATTGGAAGCTGCAAAAGCTTGAAGATTCTTGATGTCTCTCTGAACTCTCTGTCAGGAACAATACCGCGAAGCTTAGGGAACCTTTCGAATCTCGAAGAGCTTATGCTGAGTAACAACAACATTTCAGGTTCAATTCCTGAAGTTCTTTCAAACTTGACGAACCTTGTTCAGTTGCAGTTAGATACAAATGAGATTTTGGGTTCAATTCCACCGGAGATTGGAAAACTGGAGAATCTTGAAGTCTTCTTTGCATGGCAGAACAAGCTCGAAGGAGCGATTCCTTCTACGTTAGGCGGTTGTAGAAGCCTTCAAGCTTTGGATTTATCTTACAACTCACTCACCGGTGGATTACCTCCCAGTTTGTTTCAGCTTCAGAACTTAACAAAGCTTCTCCTTATCTCGAACCAAATCTCCGGCCTAATTCCGCCGGAGATTGGTAACTGCAGCTCCCTGATTCGCCTCCGCCTCGTTCAGAACAGAATCACAGGCCAGATTCCAAGTGAAATTGGTTTCCTTAACAACCTCAGCTTCCTTGATCTCTCTGAAAATCATCTCACAGGGCTGGTGCCAGAGAATATTGGTAACTGCAAGGAGCTTCAAATGCTGAACCTAAGCAATAACTCGCTTTCCGGCGCCTTGCCGAGCTCTTTATCTTCTCTTACAAGGCTTGAAGTCTTGGATGTCTCTATGAACAACTTCTCCGGCGAGTTTCCGATGAACATCGGTGAGCTGGCTTCTCTGCTTAGAATCATTGTTAGGCAAAACACTCTCTCTGGAAAGATACCTTCTTCGATTGGAAGGTGTTCTGGTCTTCAGCTTTTAGACCTTAGCAGCAACAGATTCTCAGGAAGCATACCAGAAGAACTATTCGAAATCGAAGCTCTAGACATTGCTCTTAACTTGAGTCACAACGCATTGTCTGGAATTGTTCCTCCACAGATTTCAGCTTTGAACAAGTTGTCTATCTTGGACATTTCTCATAATTTGCTTCAAGGTGACTTGTTAGCATTTGCAGGGCTTCAAAACCTTGTTTCCTTGAATATCTCATACAATAAATTCTCCGGTTATTTACCGGACAGCAAGCTATTCCGCCAGTTATCGCCGACGGATTTCGAAGGGAATCAAGGTTTGTGTCCCAATGGCCATGATTCTTGTTTCATAAGCAATGCTGCAATGACCAATATGATGCATAGTACTAATTCCAAGAGGTCTCAAAGAATCAAACTCGCAATCGGACTTCTAAGCGCATTGATAGTTGCATTAGCAATCTTTGGAATCGCTACGATCATTCGAGCAAGGAAAATTGCTCAAGATGGAAATGATTCTGAGATTGGAGAGAACTCATGGCCGTGGCACTTTACACCGTTTCAAAAGCTCAATTTCTCGGTTGATCAAGTCTTGAAGTGTTTGGTGGAGTCTAACATTATTGGAAAGGGATGTTCTGGAGTTGTTTACAAGGCCGAAATGGGAAACGGCGATGTGATCGCCGTGAAGAAGCTCTGGCCAACAACAATGGCTTCAAGATATGACTGCCGAAGTGGTGACAAGCCGGCGAGTAACTATGGAGTTCGCGATTCCTTCTCGGCCGAGGTGAAGACACTCGGCTCGATTCGCCACAAGAACATAGTGAGGTTTTTGGGCTGCTGCTGGAACAGAAACACAAGGCTGCTCATGTATGACTATATGCCTAATGGGAGCCTTGGAAATCTGCTCCATGAAAGGAGTAACTGCTTGGAATGGGATATCAGATACCGAATTATACTCGGCGCGGCGCAAGGCTTGGCCTACTTGCATCATGATTGTGTTCCTCCCATTGTTCACAGGGACATCAAGGCCAATAATATCCTCATAGGCCCTGAATTTGAACCATACATAGCTGATTTTGGACTCGCCAAACTCGTGGATGATGGCGATTTCGCGCGATCTTCTAGCGTATTGGCTGGTTCCTATGGTTACATTGCTCCTGAGTATGGCTACATGATGAAAATAACAGAGAAAAGTGATGTGTATAGCTATGGTGTTGTTGTACTAGAAGTACTAACAGGGAAGCAACCAATTGATCCAACAATACCAGAAGGAGTCCACATTGTTGACTGGGTGAGACAAAAGAGAGGCGGAACTGAAGTCCTCGACGAGAGCCTCCGCGCCCGGCCGGAACCCGAAATCGAGGAGATTCTGCAGACATTAGGTGTGGCTTTCTTGTGTGTTAATCCAAGCCCTGATGACAGGCCAACCATGAAAGATGTAGCAGCAATGCTTAAAGAAATTAGGCAAGAAAGAGAAGAGTATATGAAAGTTGATATGATTCTGAATGGATCTTCAGGAAATGATCAACAAGGAAGTAGTAATCAAAATCATTCACAATCATACCCAATTAGTAGCAGCAGCAACACAAATTTTTCTGAATCTATGTTTATTTCTCCATCAGCATCCAATAGTAAAGTTACTTTCAAATAG 3471 0.452 MAGVLRQMSMPMPMPRQSLSNHHHQMPRQSLTPRPLFFFFLLLLTLTNPTLSSSSPSNNEALALLSWLKTGSSKTPSPLSDWNLLDPTPCNWSCVKCSVDSHVIELNIQAIQLALPFPSNLSSSLPFLQKLVISDANLTGAIPRDIGHFASLTVLDLSSNSLVGSIPSTIGNLKNLQDLSLNSNQLTGSIPKEIGDCVSLKNLNVFDNSLSGDLPAELGSLSNLKIIRAGGNKDIVGKIPESLGNCKNLTVLGLADTKVSGSLPSSLGKLAMLQTISIYSTMLSGEIPAEIGNCSELVNLFLYENDLSGSIPRELGKLQKLEKMLLWQNSFVGSIPEEIGSCKSLKILDVSLNSLSGTIPRSLGNLSNLEELMLSNNNISGSIPEVLSNLTNLVQLQLDTNEILGSIPPEIGKLENLEVFFAWQNKLEGAIPSTLGGCRSLQALDLSYNSLTGGLPPSLFQLQNLTKLLLISNQISGLIPPEIGNCSSLIRLRLVQNRITGQIPSEIGFLNNLSFLDLSENHLTGLVPENIGNCKELQMLNLSNNSLSGALPSSLSSLTRLEVLDVSMNNFSGEFPMNIGELASLLRIIVRQNTLSGKIPSSIGRCSGLQLLDLSSNRFSGSIPEELFEIEALDIALNLSHNALSGIVPPQISALNKLSILDISHNLLQGDLLAFAGLQNLVSLNISYNKFSGYLPDSKLFRQLSPTDFEGNQGLCPNGHDSCFISNAAMTNMMHSTNSKRSQRIKLAIGLLSALIVALAIFGIATIIRARKIAQDGNDSEIGENSWPWHFTPFQKLNFSVDQVLKCLVESNIIGKGCSGVVYKAEMGNGDVIAVKKLWPTTMASRYDCRSGDKPASNYGVRDSFSAEVKTLGSIRHKNIVRFLGCCWNRNTRLLMYDYMPNGSLGNLLHERSNCLEWDIRYRIILGAAQGLAYLHHDCVPPIVHRDIKANNILIGPEFEPYIADFGLAKLVDDGDFARSSSVLAGSYGYIAPEYGYMMKITEKSDVYSYGVVVLEVLTGKQPIDPTIPEGVHIVDWVRQKRGGTEVLDESLRARPEPEIEEILQTLGVAFLCVNPSPDDRPTMKDVAAMLKEIRQEREEYMKVDMILNGSSGNDQQGSSNQNHSQSYPISSSSNTNFSESMFISPSASNSKVTFK 1156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241730g00012 1156 FunFam Predicted protein 215 313 - -
Stsc241730g00012 1156 MobiDBLite consensus disorder prediction 1109 1156 - -
Stsc241730g00012 1156 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g34110 791 899 - -
Stsc241730g00012 1156 MobiDBLite consensus disorder prediction 1108 1156 - -
Stsc241730g00012 1156 ProSiteProfiles Protein kinase domain profile. 808 1102 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241730g00012 1156 ProSiteProfiles Leucine-rich repeat profile. 368 391 IPR001611 GO:0005515
Stsc241730g00012 1156 SUPERFAMILY RNI-like 131 476 - -
Stsc241730g00012 1156 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 314 422 - -
Stsc241730g00012 1156 Pfam Leucine rich repeat 637 691 IPR001611 GO:0005515
Stsc241730g00012 1156 Pfam Leucine rich repeat 417 475 IPR001611 GO:0005515
Stsc241730g00012 1156 Pfam Leucine rich repeat 151 210 IPR001611 GO:0005515
Stsc241730g00012 1156 Pfam Leucine rich repeat 512 571 IPR001611 GO:0005515
Stsc241730g00012 1156 Pfam Leucine rich repeat 344 403 IPR001611 GO:0005515
Stsc241730g00012 1156 SMART LRR_typ_2 390 414 IPR003591 -
Stsc241730g00012 1156 SMART LRR_typ_2 366 389 IPR003591 -
Stsc241730g00012 1156 SMART LRR_typ_2 173 197 IPR003591 -
Stsc241730g00012 1156 SMART LRR_typ_2 462 486 IPR003591 -
Stsc241730g00012 1156 SMART LRR_typ_2 149 172 IPR003591 -
Stsc241730g00012 1156 SMART LRR_typ_2 318 342 IPR003591 -
Stsc241730g00012 1156 SMART LRR_typ_2 510 534 IPR003591 -
Stsc241730g00012 1156 SMART LRR_typ_2 678 703 IPR003591 -
Stsc241730g00012 1156 SMART LRR_typ_2 606 630 IPR003591 -
Stsc241730g00012 1156 Gene3D Phosphorylase Kinase; domain 1 793 899 - -
Stsc241730g00012 1156 SUPERFAMILY Protein kinase-like (PK-like) 795 1091 IPR011009 -
Stsc241730g00012 1156 Gene3D Ribonuclease Inhibitor 57 214 IPR032675 -
Stsc241730g00012 1156 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 900 1109 - -
Stsc241730g00012 1156 Gene3D Transferase(Phosphotransferase) domain 1 900 1113 - -
Stsc241730g00012 1156 MobiDBLite consensus disorder prediction 1 26 - -
Stsc241730g00012 1156 Pfam Leucine rich repeat N-terminal domain 58 98 IPR013210 -
Stsc241730g00012 1156 ProSitePatterns Serine/Threonine protein kinases active-site signature. 943 955 IPR008271 GO:0004672|GO:0006468
Stsc241730g00012 1156 ProSitePatterns Protein kinases ATP-binding region signature. 814 837 IPR017441 GO:0005524
Stsc241730g00012 1156 Coils Coil 1084 1104 - -
Stsc241730g00012 1156 FunFam Nuclear pore complex protein NUP107 57 214 - -
Stsc241730g00012 1156 Gene3D Ribonuclease Inhibitor 330 418 IPR032675 -
Stsc241730g00012 1156 SMART serkin_6 808 1091 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241730g00012 1156 Gene3D Ribonuclease Inhibitor 419 726 IPR032675 -
Stsc241730g00012 1156 SUPERFAMILY RNI-like 382 698 - -
Stsc241730g00012 1156 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 440 727 - -
Stsc241730g00012 1156 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 314 1093 - -
Stsc241730g00012 1156 Gene3D Ribonuclease Inhibitor 215 329 IPR032675 -
Stsc241730g00012 1156 PRINTS Leucine-rich repeat signature 655 668 - -
Stsc241730g00012 1156 PRINTS Leucine-rich repeat signature 513 526 - -
Stsc241730g00012 1156 Pfam Protein kinase domain 810 1087 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241730g00012 Stsc-Chr241730 100721 104569 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241730g00012 58 1110 Receptor kinase-like Gene Family AT5G56040 48.360 0.0 981
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc241730g00012 Pkinase 1.7e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241730g00012 - - gmx:100815339 1636.31