Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241730g00011 ATGAAGAGTGATGAAGTGGAAGTTCATGCAGGTTTTGAAACCATGGATGATGATGAAGATGTTAACAACAACACTAATAACAATAACAACAATAAGAACACAGAAGATCTGAGTGAAGTGAATTACGAGTGGCTTCATGATTCAATTGATGATCCAAACTTGTTCTACGATGATTTCCCTCCTCTCCCTGATTTTCCATGCATCTCATCACCACCATCATCCTCATCATCAACATCTTCAACATCAAAGAAGCCACAGAAACAAAACCCCATCACTACTACTACTACTGCATGTTCTTCATCTTCCTCTGCTTCTTCTTCTTCAAAACACATGCAGAAAACAATAACCATTGTTGAAGGTGAAACAGAAGCAGCAGCACCTTTGTGTTCCACTGCTTCCATGGATACTCCATTGTTGTTCCCAAACAATGGTGGTGTTGGTGATTGCATGGACATGATAGACATGGAAATGGAGCCTTTTGGGTTCATAGACATGTTAGAAGACCAAAACAATGCTGATTTCTTTCACCCAGATTCCATCTTCCAACACAACAACAACAACCTTCTTCAAACTGAAAATGCAAATGAAAATGAAATTCCAGCATTACAACAACAACCAGAAGTAGAGGCAGAGGGTGAAATGGTAATTCAGCATAACCATGATGATGAAATGAGCAATGTGTTCTTGGAATGGCTCAAGTCGAACAAGGACAAGATCTCAGCGAGTGATTTGAGGAGTGTGAAGCTCAAGAAATCAACCATTGAATCCGCGGCGAAGCGATTGGGAGGAGGAAAACAAGGGATGAAGAGTTTGCTCAAGCTTATTCTTGAATGGGTTCAAACCAGTCACCTCAACAACAAGAACCCACCAATTGGATTTGGGTTTGAACCTCAATCTTCATCAAACCCTAATTTCTTCAATAAACCCCAATTATCACAACCGCCACCGCCACCACAACCCTGCATTTATGCCTCTCAACCTTCTTCAATGGTGCAGTACCTTCCACAGCCTGCAGAGAATAATGCATGGCATAATTCTCAGTTAAATGTTGCTTCCCATTATAACCAACCATTTGGGGACAATCATTTTCGCCCTGCTGTTCTTTATGGGAATCAGTACCCTTATCAGTTGTTGTATGGAAATGGAAGTGGTGGTGGTGATCATGGGTGGCGGAGATTAGGCCCTTTGGCTACGAAAGAAGCGAGGAAGAAGAGGATGGCGAGGCAGAGAAAGTGTTCTTCATCACATCAGAGGCAGAACAATCACTCTGCCCAGCCACAGAATCAGAGCCAAGCTGCTGATCCGGTGGCCGGAGCCGAAAATTGCAGTCCCGGGAATTGGGTGTATTGGCAGGGTGCTGAGGTTCAGCCGGCCGCACCAGGCCAGAATTATTGTCATCAGGGTCGTGGATCATCGGATAAGCGATCACAGGGGTGGAAGTCATCAGAGAAGAACTTGAAATTTCTTCTTCAAAAGGTTTTGAAGCAAAGCGATGTTGGTAGCTTGGGAAGAATAGTCTTGCCCAAAAAAGAGGCAGAAACTCATTTGCCAGAATTGGATGCAAGAGATGGAATCTCTATTGACATGGAAGACATTGGAACTTCTCACGTGTGGAATATGCGTTATAGATACTGGCCAAACAATAAAAGCCGGATGTATCTGCTTGAGAACACTGGAGACTTTGTGAGAGCCAATGGACTCCAAGAAGGAGACTTTATAGTGATATATTCAGATGTGAAGTGTGGCAAATTTATGATAAGAGGCGTGAAAGTGAGGCAAGCAGGGACGCCATCAGAGACCAAGAAAGCAGCAGGAAAAACGCAGAAAAACCAGCGTACAGCTGTTAACGTTAATGCTCCTCACAATAATGCTACTTCGTCTTCACCTCATCAGCTCATCAAAATGGAAAATTAA 1914 0.4326 MKSDEVEVHAGFETMDDDEDVNNNTNNNNNNKNTEDLSEVNYEWLHDSIDDPNLFYDDFPPLPDFPCISSPPSSSSSTSSTSKKPQKQNPITTTTTACSSSSSASSSSKHMQKTITIVEGETEAAAPLCSTASMDTPLLFPNNGGVGDCMDMIDMEMEPFGFIDMLEDQNNADFFHPDSIFQHNNNNLLQTENANENEIPALQQQPEVEAEGEMVIQHNHDDEMSNVFLEWLKSNKDKISASDLRSVKLKKSTIESAAKRLGGGKQGMKSLLKLILEWVQTSHLNNKNPPIGFGFEPQSSSNPNFFNKPQLSQPPPPPQPCIYASQPSSMVQYLPQPAENNAWHNSQLNVASHYNQPFGDNHFRPAVLYGNQYPYQLLYGNGSGGGDHGWRRLGPLATKEARKKRMARQRKCSSSHQRQNNHSAQPQNQSQAADPVAGAENCSPGNWVYWQGAEVQPAAPGQNYCHQGRGSSDKRSQGWKSSEKNLKFLLQKVLKQSDVGSLGRIVLPKKEAETHLPELDARDGISIDMEDIGTSHVWNMRYRYWPNNKSRMYLLENTGDFVRANGLQEGDFIVIYSDVKCGKFMIRGVKVRQAGTPSETKKAAGKTQKNQRTAVNVNAPHNNATSSSPHQLIKMEN 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241730g00011 637 MobiDBLite consensus disorder prediction 400 439 - -
Stsc241730g00011 637 ProSiteProfiles B3 DNA-binding domain profile. 490 592 IPR003340 GO:0003677
Stsc241730g00011 637 MobiDBLite consensus disorder prediction 65 113 - -
Stsc241730g00011 637 CDD BfiI_C_EcoRII_N_B3 488 589 - -
Stsc241730g00011 637 FunFam B3 domain-containing transcription factor FUS3 486 601 - -
Stsc241730g00011 637 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 217 619 IPR044800 GO:0003700
Stsc241730g00011 637 MobiDBLite consensus disorder prediction 21 36 - -
Stsc241730g00011 637 MobiDBLite consensus disorder prediction 1 36 - -
Stsc241730g00011 637 MobiDBLite consensus disorder prediction 600 637 - -
Stsc241730g00011 637 SUPERFAMILY DNA-binding pseudobarrel domain 489 585 IPR015300 -
Stsc241730g00011 637 MobiDBLite consensus disorder prediction 298 317 - -
Stsc241730g00011 637 MobiDBLite consensus disorder prediction 595 637 - -
Stsc241730g00011 637 MobiDBLite consensus disorder prediction 413 436 - -
Stsc241730g00011 637 Gene3D - 480 597 IPR015300 -
Stsc241730g00011 637 Pfam B3 DNA binding domain 491 587 IPR003340 GO:0003677
Stsc241730g00011 637 SMART B3_2 490 590 IPR003340 GO:0003677
Stsc241730g00011 637 MobiDBLite consensus disorder prediction 69 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241730g00011 Stsc-Chr241730 89440 92691 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241730g00011 51 629 B3 DNA Binding Superfamily AT3G24650 42.899 1.22e-124 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc241730g00011 B3 3e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241730g00011 K09287 - gmx:100795226 468.774