Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241729g00020 ATGGCAGGAAACTTCAGATTCCCAATGGACCAAAAGGATATCCTTAGATTCTTGACTACAACCATCGATAGTTTCATTCAGGATCGATTAATCGACAAAGAACTAAGAGCTCAGCACAAAGAACAGTGTGCAGAGAGGTTAGCAGCTGAAGATGGAAGTTCTGAAAAGGACACTGAGGTAGAGTACTCTGATCAAGCAGTGTTAGCAAATCTTGATTGGGGTATTGAGGCGCTTGAAGAAGCTATCAATACTTATAACACGGAAACTAAGCACGCGAGACTCGATTATGCTGAGAAGATGTTACAAGTTTGTGCAATGCTGAATCCTAAGCAGAAGACTGCTGGAGTGCCAAACTTCTACCTCTCAGCTTGGGCACATTTGAACCTATCATACCTATGGAAGTTGAGGAACAACATTCAGAATTGTGTTCTTCATGCTATTGACATGTTCATCATTGATCCTTTCTTTGCTCGGATAGACTTTGCTCCGGAACTCTGGAAAACTCTATTCCTTCCACACATGAGCTCTATTGTAGGGTGGTATTCAGAGGAGAGGCACAAACTTATGATGGAAGTAATACCTGAAACTTCAGATTTTTCCGTTACGGCTGATTTTGATCAACTTTTCAATGAATCCTTGGTATTCTCTATGAGGCCAAATCAGTTAGATAAGTTGCAAAAACTGGAGCAGCTTTATGGAGAGTCATTGGACGAGAACACACGGCTATATGCAAAGTACTATAAGGATTGCTTGAACTCTGATGCCACTACCTCAAGCAAGAAGGTTGCTCCAATGCTGCCAATTGCTGAGCCCCCAATGACTCCTTTGCATGAGTTGAGCAGGTCGGTTCCTGATTATGTGAAATTCGGTCCGATTTTGCCTAAGAGTGCTGGCTTTTCTTTGATGTCAACACCCAAAGATGATGTAAATGAGAAAACCAGAGATAATCCATCCAGCCATTCCAAGGTGGAAAATTCATCTATGTGGGGTACTAAGGAGAGCATCATTGAAGAGAATGAAAATGAAAATGAAGATGAAGATGAAGATGACTCAGATTCTGAGCTTGATGATGCATCTGTGGATTCTGCTAACAAAAATAACATCTTCTCGCCTGAAAGGAAGGCGATCAAGGACGAAAATATTGAGTCGAAAGTGCATCTGTTAAACCAAAGGAATAAAATATATTCTCCTAGTGTTTCCTCTCCCTTGGACTCTCCAAGAACTCCTCAAGACAATTCATCAACAAGTCCTCACATGCGCAGCAAAAGAGAGCCGAAGTACTTGCGCTTATTGTCTAGTCGATTAAGGGACTCGATTATTTCTGACTCTTTAACATCATCACCAGACCTGAGCTCTGATCACATTTTGAACTCTGATCATGAAATGATGGCCATGAAGAACATTAAGAAGAAAGACTATAATCGAATGCCAGGTATGAGTCATGAAAATGAGGATAGCCTGGTGTTAAATGACAGTTCCTTTTGTGAAAGTGAGGAGGGATATCATGGCTGCATTTCATTGCCTAAATTAGAGAAGCAGACTACCGGATCAAAACCGCCGAAAGATTTTGTATGTCCAATCACAGGTCAGATATTTTGTGATCCTGTCACCCTTGAAACAGGCCAGACCTATGAAAGAAAAGCCATTCAAGAGTGGCTCAAAACAGGAAACACAACATGCCCCATCACGCGACAGCCTCTATCCGCAAGCATGTTACCTAAAACAAACTATGTTTTGAAGAGATTGATAACATCCTGGAAAGAACAACATCCTGAACTAGCTCTGGAGTTCTCAAATTCTAACACCAACACACCAAGGGGTTCTTCCTGTTCTCCCTTGGGGAAAGACACCTCAATGCTGTCCATTTCACAAAAAACACCTGACTCAACAACTCATAAGAACAAAGAGGATTATATCATACAAAGGAGCAAAAGATTTATGCAGGTTGCTTCAACATCTCCAACTAGTGTACTATCTCAAGCAGCAGTTGAAACTATTTTGAATTCCATGAAACCGTACATTTCAAGTCTCTGCACATCAGAAAACTTACAAGAATGTGAAGAAGCTGTGTTGGAAATTGCCAGATCATGGAAGGATGCAAAGAGTGATCCTCAGATTCATTCTTATTTATCAAAACCAACTGTCATAAACGGTTTAATGGAAATACTTTCAGCTTCTATGAATGGAGAAGTTCTGAGGACAACAGTTTACATTCTTACAGAGCTAATTTTTCTAGACGAAAGTGTCGGAGATACACTTAACAGTGTAGATTCTGATTTTGATTGTTTGGCTGCTCTGCTCAAGAATGGTTTGGCTGGGGCAGCACTTCTGATATATCTGTTAAGACCTGTTTTTGCTCAGCTGTCAGCCCATGAGCTTATACCCTCTCTAATCCAAGTGATTCTGAACAAAAATGAGGAGTTGGATAATTATCAGTTAGTTATGGACCCCAAAGATGCCGCGATAGCAATTCTTGAACAAATTTTAGCAGGAGGGGATGAATACAGCAGGTCCCTTAATGCTTTGAGTGTTATTTCGGCAAATGGAATTCCGGCCTTAGTAAAATATTTAGAGAGGATGGAGATAAGGAGGTCTGTTGTTTCCATACTTTTGTGTTGTATGCAAGCTGAAAAAAGTTGCAAGAACTTGATAGCAAGTAGAATCGAATTGTCTCCTGTTCTTGAATTATTTCATGGTGGAAATGATAGTGTGAGGGGCATCTGCGCAGAATTTCTCTCAGAGCTGGTTCAATTGAATAGGAGAACTTTCTGCAACGAAATCTTACAAATGATCAAGGATGAAGGAGCATTTAGTACAATGCATACATTTCTTGTATATCTTCAGATGGCTCCAATGGAGCATCAGATTGCTATTGCCAGTCTTCTTCTTCAGCTTGATCTTCTGGTGGAGCCGCGAAAGATGAGCATTTATAGGGAAGAAGCTGTAGAGACACTGATTGAAGCACTTTGGCAAAAAGACTTCTCAAATACTCAAATTAAGGCTTTAGATGCTTTACTATATCTTATTGGACATGTCACTTCCTCAGGAAATTCATATACTGAAGCCTGGTTACTCAAGATCGCAGGATTCGATCAGCCTTACAACTCTTTGATGAAGGCCGAGGAGTTGGGACAACGTGACATTGATTTGGTGGAAACAATGGAGGATGAGAAAAAGGCCTTGAGCTCTTGGCAGCAAAGGGTTGCATTTGTACTCTGCAACCATGAAAATGGTTCAATATTTAAAACTTTGGAAGAATGCTTAAGGAGTACTTCACTAGAGATGGCGAAATCTTGCCTTGTTCTGGCCACATGGCTTACACACATGCTCTCTACGCTTCCTGACACCGGCATAAGAGACGTTGCTCGCAAGTCATTGCTTGCCGAATTCATAAATGTTCTACTGTCATCAAAGAACATGGAGGAAAAAATTCTTGCTACCCTAGCTTTGAATACTTTCATTGGTGATCCAACTGCTCATGAAGCACTTGGAGCCTATGCTAAAAGCATTTATAGAACCTTGAGGAAGCTAAAGAAACATTCAGCTGCAGCAGTTGATATTATGAGAACCATACTAAACTTGAAATCTGTTGATGTGACTGAATTGTGGAGTTGTAAAGAAGTTGTTGAGTTAGATTTGAGCTCAAATGGAGAAGTGCTTTCTTTGCTTTATCTGAATGGACAGGTCTTGAGTGGACACTCCGATGGAACTATCAAGGTATGGGATGCAAGGAAGAGAATACCAAGAATCATTCAAGAAACTCGCGAGCACACAAAAGGTGTAACTTCTCTGTGTTCTTCCGGTGACAGACTCTACAGTGGTTCCTTGGACAAAACCATCAGGATTTGGACGATCAAACCCAATGAGATTATATGTATAGATGTTCATGATGTTTATAATTGGTCAGAGGCTCCAAAGCATATCAATTTCAGCAAGTATGTGAAGTGCCTTGCTGTTGCCGGCGACAAATTGTATTGCGGCTGCTCAGGTTACAGCATTCAGGAGGTTGACTTGTCCAGACAGACATCATATCCATTCTTCTCTGGTACAAGAAAATTGTTGGGAAAACAAACCATACACTCCCTTCAAATTCATGATGGTTTCCTCTATGCATGTGGATCTTCTGTTGATGCAACTGCAGGAAAGATATTTTCACTCTCCCCCAAAACGGTAGTAGGATCACTATCAACTGGACTCGACATCCATCGGGTAGCCATCAACAATGACTTCATATTTGCAGGTACGAAGTTTGGCACCATTGAGGTTTGGCTGAAAGATAAGTTCACCCGGGTCGCTTCCATCAAAATGGCTGGTGGTAACACAAAAATCACATCATTAGTATCAGATGCAGATGGTATGATGCTTTTTGTTGGTTCCTCTGATGGAAAGATCCAGGTTTGGGCCTTGGATTAA 4413 0.4099 MAGNFRFPMDQKDILRFLTTTIDSFIQDRLIDKELRAQHKEQCAERLAAEDGSSEKDTEVEYSDQAVLANLDWGIEALEEAINTYNTETKHARLDYAEKMLQVCAMLNPKQKTAGVPNFYLSAWAHLNLSYLWKLRNNIQNCVLHAIDMFIIDPFFARIDFAPELWKTLFLPHMSSIVGWYSEERHKLMMEVIPETSDFSVTADFDQLFNESLVFSMRPNQLDKLQKLEQLYGESLDENTRLYAKYYKDCLNSDATTSSKKVAPMLPIAEPPMTPLHELSRSVPDYVKFGPILPKSAGFSLMSTPKDDVNEKTRDNPSSHSKVENSSMWGTKESIIEENENENEDEDEDDSDSELDDASVDSANKNNIFSPERKAIKDENIESKVHLLNQRNKIYSPSVSSPLDSPRTPQDNSSTSPHMRSKREPKYLRLLSSRLRDSIISDSLTSSPDLSSDHILNSDHEMMAMKNIKKKDYNRMPGMSHENEDSLVLNDSSFCESEEGYHGCISLPKLEKQTTGSKPPKDFVCPITGQIFCDPVTLETGQTYERKAIQEWLKTGNTTCPITRQPLSASMLPKTNYVLKRLITSWKEQHPELALEFSNSNTNTPRGSSCSPLGKDTSMLSISQKTPDSTTHKNKEDYIIQRSKRFMQVASTSPTSVLSQAAVETILNSMKPYISSLCTSENLQECEEAVLEIARSWKDAKSDPQIHSYLSKPTVINGLMEILSASMNGEVLRTTVYILTELIFLDESVGDTLNSVDSDFDCLAALLKNGLAGAALLIYLLRPVFAQLSAHELIPSLIQVILNKNEELDNYQLVMDPKDAAIAILEQILAGGDEYSRSLNALSVISANGIPALVKYLERMEIRRSVVSILLCCMQAEKSCKNLIASRIELSPVLELFHGGNDSVRGICAEFLSELVQLNRRTFCNEILQMIKDEGAFSTMHTFLVYLQMAPMEHQIAIASLLLQLDLLVEPRKMSIYREEAVETLIEALWQKDFSNTQIKALDALLYLIGHVTSSGNSYTEAWLLKIAGFDQPYNSLMKAEELGQRDIDLVETMEDEKKALSSWQQRVAFVLCNHENGSIFKTLEECLRSTSLEMAKSCLVLATWLTHMLSTLPDTGIRDVARKSLLAEFINVLLSSKNMEEKILATLALNTFIGDPTAHEALGAYAKSIYRTLRKLKKHSAAAVDIMRTILNLKSVDVTELWSCKEVVELDLSSNGEVLSLLYLNGQVLSGHSDGTIKVWDARKRIPRIIQETREHTKGVTSLCSSGDRLYSGSLDKTIRIWTIKPNEIICIDVHDVYNWSEAPKHINFSKYVKCLAVAGDKLYCGCSGYSIQEVDLSRQTSYPFFSGTRKLLGKQTIHSLQIHDGFLYACGSSVDATAGKIFSLSPKTVVGSLSTGLDIHRVAINNDFIFAGTKFGTIEVWLKDKFTRVASIKMAGGNTKITSLVSDADGMMLFVGSSDGKIQVWALD 1470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241729g00020 1470 Gene3D - 667 946 IPR011989 -
Stsc241729g00020 1470 SMART WD40_4 1427 1468 IPR001680 GO:0005515
Stsc241729g00020 1470 SMART WD40_4 1204 1242 IPR001680 GO:0005515
Stsc241729g00020 1470 SMART WD40_4 1247 1284 IPR001680 GO:0005515
Stsc241729g00020 1470 MobiDBLite consensus disorder prediction 392 416 - -
Stsc241729g00020 1470 MobiDBLite consensus disorder prediction 300 371 - -
Stsc241729g00020 1470 ProSiteProfiles Trp-Asp (WD) repeats profile. 1229 1242 IPR001680 GO:0005515
Stsc241729g00020 1470 Gene3D - 1175 1470 IPR015943 GO:0005515
Stsc241729g00020 1470 ProSiteProfiles Trp-Asp (WD) repeats profile. 1254 1293 IPR001680 GO:0005515
Stsc241729g00020 1470 SMART Ubox_2 522 586 IPR003613 GO:0004842|GO:0016567
Stsc241729g00020 1470 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 508 600 IPR013083 -
Stsc241729g00020 1470 ProSiteProfiles U-box domain profile. 518 593 IPR003613 GO:0004842|GO:0016567
Stsc241729g00020 1470 MobiDBLite consensus disorder prediction 320 334 - -
Stsc241729g00020 1470 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1436 1470 - -
Stsc241729g00020 1470 Coils Coil 75 95 - -
Stsc241729g00020 1470 SUPERFAMILY ARM repeat 713 1162 IPR016024 -
Stsc241729g00020 1470 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1298 1469 - -
Stsc241729g00020 1470 Pfam U-box domain 520 590 IPR003613 GO:0004842|GO:0016567
Stsc241729g00020 1470 ProSiteProfiles Trp-Asp (WD) repeats profile. 1436 1470 IPR001680 GO:0005515
Stsc241729g00020 1470 MobiDBLite consensus disorder prediction 392 425 - -
Stsc241729g00020 1470 SUPERFAMILY RING/U-box 517 591 - -
Stsc241729g00020 1470 MobiDBLite consensus disorder prediction 338 357 - -
Stsc241729g00020 1470 Pfam WD domain, G-beta repeat 1226 1242 IPR001680 GO:0005515
Stsc241729g00020 1470 Pfam WD domain, G-beta repeat 1253 1283 IPR001680 GO:0005515
Stsc241729g00020 1470 CDD RING-Ubox_PUB 520 572 IPR045210 -
Stsc241729g00020 1470 PRINTS G protein beta WD-40 repeat signature 1229 1243 IPR020472 -
Stsc241729g00020 1470 PRINTS G protein beta WD-40 repeat signature 1271 1285 IPR020472 -
Stsc241729g00020 1470 PRINTS G protein beta WD-40 repeat signature 1455 1469 IPR020472 -
Stsc241729g00020 1470 SUPERFAMILY WD40 repeat-like 1221 1469 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241729g00020 Stsc-Chr241729 101849 108584 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241729g00020 520 635 U-box Gene Family AT3G54850 40.678 1.44e-15 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241729g00020 - - gmx:100776142 2325.82