Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241729g00001 AAGGAATTGCCAACTTGTTTGCAAGAAATGGCAATGGAATCAAAGTTTTTGGACAACAACAATGCAACTATAAGAAGCTCTCATCACTCTCTTACTACTTCTCATCATGTTCATGCAAACTTTTCAATGGCATCATCACCTGAAACTGAAAGGCTTCTTTCATGTTCACATTCAATGAAAGAAGAAGAGGTGGTAGTGCCCTATGATTCCACTTTGATTGGCCATGTCCCTTCAAATTTAAATTTCCATGGCCATGAAGACACAAGAAATGGGCAAGAGAAAAACCATACCTTTCAAAGATTCAATAATAACCCTCTGAATCTGTTGGAGACTCTGCCAGCATTAACCATAGCACCATCTTCTTCTTCTTCTCCTCCTTCTTCTTCTTCTTCTTCACACAAATTTCCAAACTTGACATTGTTCTTGCAGGAACCTTCCATGCTCTACTCATCATCCTCACAGCTAAAAAGTGGTGAATCCATGTCATCAGAATCTTCAAACTCCACATTCCCATTTTCACAATTAGGCCAAACTCAGCACCAAACAACCACTGATCCACACAAAATCACCAAGAATCTATCAAACATGAGGAGGTCCAAGTCTTTCAATGATCACCAGAATTGGTTGAGCACAAGGACTCAGCCTTTTAAGTGCGGCGGCGGAGGTGGAAGAGTCAACAACAACAGGCTTTTCAAAGGGGTGAGGCAGAGACACTGGGGAAAATGGGTTGCTGAGATAAGATTACCAAGAAACAGGACAAGGGTGTGGTTAGGGACATTTGATACAGCTGAAGATGCAGCCATTGCATATGACACTGCAGCATATATACTAAGAGGGGATTATGCACAGTTGAACTTCCCTGAATTGAAGCATGTCATCAAGGCCAATTCTCTTAATGGAACCATCTCAGCACTCGTTGAGGCAAAACTACAAACAGTTCATCTGCAGAAAAAGAATCCTGACAAAAACAACAACAATTATGATGATGATTCACCACCATCAGCAGTTTCAGCATGCAAAATTAATGGAAATAAGGATTCATCATCAAGCATAATGGAGTTGCAGTTTGATGCTAATGAGAGAAGCAACAAAAGTGGTTCACTTTCGCTTCACCATGATCATCATCATCAGGTTTTGGATGTGGAAGGTGTTCAATTGAGCAGAATGCCATCATTGGATATGGATCTTATTTGGGATGCACTTTTAGTCTCTGATTCATGA 1221 0.4062 KELPTCLQEMAMESKFLDNNNATIRSSHHSLTTSHHVHANFSMASSPETERLLSCSHSMKEEEVVVPYDSTLIGHVPSNLNFHGHEDTRNGQEKNHTFQRFNNNPLNLLETLPALTIAPSSSSSPPSSSSSSHKFPNLTLFLQEPSMLYSSSSQLKSGESMSSESSNSTFPFSQLGQTQHQTTTDPHKITKNLSNMRRSKSFNDHQNWLSTRTQPFKCGGGGGRVNNNRLFKGVRQRHWGKWVAEIRLPRNRTRVWLGTFDTAEDAAIAYDTAAYILRGDYAQLNFPELKHVIKANSLNGTISALVEAKLQTVHLQKKNPDKNNNNYDDDSPPSAVSACKINGNKDSSSSIMELQFDANERSNKSGSLSLHHDHHHQVLDVEGVQLSRMPSLDMDLIWDALLVSDS 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241729g00001 406 CDD AP2 231 289 IPR001471 GO:0003700|GO:0006355
Stsc241729g00001 406 MobiDBLite consensus disorder prediction 152 187 - -
Stsc241729g00001 406 SUPERFAMILY DNA-binding domain 230 287 IPR016177 GO:0003677
Stsc241729g00001 406 PRINTS Ethylene responsive element binding protein signature 231 242 IPR001471 GO:0003700|GO:0006355
Stsc241729g00001 406 PRINTS Ethylene responsive element binding protein signature 253 269 IPR001471 GO:0003700|GO:0006355
Stsc241729g00001 406 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 81 401 - -
Stsc241729g00001 406 SMART rav1_2 230 293 IPR001471 GO:0003700|GO:0006355
Stsc241729g00001 406 MobiDBLite consensus disorder prediction 316 342 - -
Stsc241729g00001 406 Gene3D AP2/ERF domain 230 288 IPR036955 GO:0003700|GO:0006355
Stsc241729g00001 406 ProSiteProfiles AP2/ERF domain profile. 230 287 IPR001471 GO:0003700|GO:0006355
Stsc241729g00001 406 MobiDBLite consensus disorder prediction 326 342 - -
Stsc241729g00001 406 Pfam AP2 domain 231 278 IPR001471 GO:0003700|GO:0006355
Stsc241729g00001 406 FunFam Ethylene-responsive transcription factor 2 229 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241729g00001 Stsc-Chr241729 30 1250 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241729g00001 105 401 AP2-EREBP Transcription Factor Family AT4G13620 43.000 1.38e-59 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc241729g00001 AP2 3.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241729g00001 - - aip:107616692 568.54