Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241728g00008 ATGGCTCCAATGAGTCTGCCACCAGGTTTCAGGTTCCACCCAACAGATGAAGAGCTTGTTGCTTATTACTTAGAAAGGAAGATAACAGGTCGCTCTATAGAGCTTGACATCATAGCTGAAGTTGATCTATACAAATGTGAACCATGGGATTTGCCAGATAAGTCATTTCTGCCAAGCAAGGATATGGAGTGGTATTTCTACAGTCCAAGGGACAGAAAATACCCTAATGGATCGAGAACGAACAGGGCCACAAGAGCCGGGTACTGGAAAGCCACCGGGAAAGACAGGGCGGTGCAGTCTCAGAAGAGAGCAGTTGGTATGAAGAAGACATTGGTGTATTACAAAGGAAGAGCTCCACATGGGATTAGAACCAACTGGGTCATGCATGAGTATCGCTTGATTGAATCCCTCCCTGGAACTCCTCACTCATCTTTGAAGGATTCCTATTCATTGTGCCGGATTTTCAAGAAGACAATTCAAATTCAAGCCAAACCTAAAGAAGAGGAAGAACATCAAGCATTACTAGGGGAAGATCACTCAAGTGGCATTGAGATTTCAAGAGAAATAATGGAAACCATGGACGATGATAACAACAATAATAATAAAGTTCTAAATAGTAATAATAATAATAATGAGCAATATCCAAATAATAATAATAATAAAGTCCCTAATTGTGATGCTTCATCTTCTGATCTGACTCAAGGAACATGCACACCCACACCCACAGAAACCGGTATAGCAGATGATTTTCATGCCCAATTTGCTTGTGATGAAGCAAACAGTGCTGCTAATTCTTACTCAATGGGAATATCATACTCCTCAAACCTTTTTCAGGACATAGAGATGTCTATCTATGGAAGCATGCATAATTATCAATTCCCACAAACACCCTTGGTGATGGAAGATTTCCCACAATTAAATTTTGCCGAGACAAAGTCATTGAAGCCAGAGGTGAATGAAGACTGCATGTTATTATATGATAGATATAGTAGTAGGGATTGTATGAATGGAACACTAGAAGAAATCATCTCATTGTGTTCCTCTCAAGACAACTCTGTGGCTTTGCCCATGCTAGAATAA 1080 0.4019 MAPMSLPPGFRFHPTDEELVAYYLERKITGRSIELDIIAEVDLYKCEPWDLPDKSFLPSKDMEWYFYSPRDRKYPNGSRTNRATRAGYWKATGKDRAVQSQKRAVGMKKTLVYYKGRAPHGIRTNWVMHEYRLIESLPGTPHSSLKDSYSLCRIFKKTIQIQAKPKEEEEHQALLGEDHSSGIEISREIMETMDDDNNNNNKVLNSNNNNNEQYPNNNNNKVPNCDASSSDLTQGTCTPTPTETGIADDFHAQFACDEANSAANSYSMGISYSSNLFQDIEMSIYGSMHNYQFPQTPLVMEDFPQLNFAETKSLKPEVNEDCMLLYDRYSSRDCMNGTLEEIISLCSSQDNSVALPMLE 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241728g00008 359 Gene3D NAC domain 15 161 IPR036093 GO:0003677|GO:0006355
Stsc241728g00008 359 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Stsc241728g00008 359 MobiDBLite consensus disorder prediction 193 236 - -
Stsc241728g00008 359 ProSiteProfiles NAC domain profile. 6 157 IPR003441 GO:0003677|GO:0006355
Stsc241728g00008 359 SUPERFAMILY NAC domain 3 157 IPR036093 GO:0003677|GO:0006355
Stsc241728g00008 359 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 223 - -
Stsc241728g00008 359 MobiDBLite consensus disorder prediction 196 236 - -
Stsc241728g00008 359 FunFam Nac domain-containing protein 86 15 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241728g00008 Stsc-Chr241728 54697 59263 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241728g00008 1 344 NAC Transcription Factor Family AT1G54330 51.594 1.76e-102 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc241728g00008 NAM 4.3e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241728g00008 - - aip:107611200 583.563