Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241726g00012 ATGGGGGATGAAGATGATGAAGGCCCAAATTTGATGATGCAAGATCGAACTCTGTTGAAAAGGATGAAGCAAGTGAAGAGCATGAGGAGCAAGAGGAGGAGTGATAAGAGGAGAGTGAGATATGACAGTGAGTTTGAGAGTGACAAGAGCTGGGCATTGAGGTTACTATCAATTGCATGTCTTACTCTAGCTGCAAAGATGGAGGAGCACCAAGTGCCGGCGCTACCGGAGTTCCAATCGGAAGATTATTGCTTCGAAAACAAAGTGATTAAGAGAATGGAGCTCTTGGTGCTTAGCACATTGGAATGGAACATGGCTATAATCACCCCATTATTTTTCCTTCCTTATTTCATCACAAAGCTTTGCAATGAATCCCAAACATGCCATGTTTTTTCCAAGGCTATGGAAATCATCTTCACACTAATACAAGAGGTCAATTTAATGGATCATAGGCCATCTGTTATTGCAGCTGCAGCAACTTTGGTTACAATTGATCAGCATTTGACAATAGAAGCAGTAGAATTGAAGATGAGTTCAATTCACCAATTCACATTTCTTGAACCTGAAGATATATTTGCATACTATAATCAAATTCAAAGTTTTTACAATGAGAAAACTATAAGACACATTCATTTTCCTGGTCCTTCACCTCTCCGATCATGGCCAGTTGGCATGGCAGGGAGCTCTGTGGAAGCTTCTGCAGCCATGAACAAGAGAAGGAGACCCACATTCAATAATGATAAACAAGCTTGTGATGATGAGTAA 765 0.4065 MGDEDDEGPNLMMQDRTLLKRMKQVKSMRSKRRSDKRRVRYDSEFESDKSWALRLLSIACLTLAAKMEEHQVPALPEFQSEDYCFENKVIKRMELLVLSTLEWNMAIITPLFFLPYFITKLCNESQTCHVFSKAMEIIFTLIQEVNLMDHRPSVIAAAATLVTIDQHLTIEAVELKMSSIHQFTFLEPEDIFAYYNQIQSFYNEKTIRHIHFPGPSPLRSWPVGMAGSSVEASAAMNKRRRPTFNNDKQACDDE 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241726g00012 254 PANTHER CYCLINS 15 171 IPR039361 -
Stsc241726g00012 254 Pfam Cyclin, N-terminal domain 49 105 IPR006671 -
Stsc241726g00012 254 SMART Cyclin_C_2 108 224 IPR004367 -
Stsc241726g00012 254 Gene3D - 49 106 - -
Stsc241726g00012 254 Pfam Cyclin, C-terminal domain 108 205 IPR004367 -
Stsc241726g00012 254 MobiDBLite consensus disorder prediction 232 254 - -
Stsc241726g00012 254 Gene3D - 107 198 - -
Stsc241726g00012 254 CDD CYCLIN_AtCycD-like_rpt2 108 198 - -
Stsc241726g00012 254 SUPERFAMILY Cyclin-like 43 105 IPR036915 -
Stsc241726g00012 254 SUPERFAMILY Cyclin-like 91 180 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241726g00012 Stsc-Chr241726 89022 93467 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241726g00012 45 184 Core Cell Cycle Gene Families AT4G37630 36.913 6.37e-27 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241726g00012 K18811 - gmx:100780266 231.876