Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241726g00010 ATGGCTCTCGTCACTCCCAAAAGTAGCAGCTTCAATCCTACTGATCAAGAACTCGTTTTAAATTTTCTCTACAACAAGATTAATGGCAAACCTCTTCCTAGTGAAGCCACCGCCAACATTCATCAATATGATGACTTATTATTCGGCGAAAAGAAGCCATGGCAGATTTGGGAGGCTTTTGGAGGCGATGGAAGCGACGGCGGTGTGCTCTACTTCTTTTCAATCAAGAAAAAGAAAACCTCACGTTCTGAGAATGCTTCATGGAAGGAACTTGAGGAGAAGGCTAGAGCTAAACCTATAACTGTAAAAGAGGGAACAAAGAAAGAAATAATTGGTACCAAGAAATCACTTGTTTGGAATGAGAATAATAATAGTGTTGTTAGTTCTTCATGGATCATACATGAATATATGCTTCATCAATCTAAGGTGGACATCACTAGTTATTCACGCAATCGTGTTCTATGCAAATTGTTCAAGAATCATGTGAATCATGCTCTGCAGGTGAAAACAGATTTGTGCAACATAGAAAATAAGCAATCCAAGCAACTGAAAATTGGAGCTGATACCACCAATTCTATTGACAACAATGATGGTTTCAAGTGTCCGGAAATTGGAGCTACTGCCCCGACATCTACCTTTGACAATGGTGGCTGGAAAGATGCTTCAGATAGAGCAAAAAGGTTCAAAACATGGCAACCCCTCCAAACACAGTGTGGTGGTGATGATGATGTTGGAAACACTACGGCAGATAATGAAAGAAATATTACATTAATCTTGAGGAACACAATTTACCTTGGGAGTATGCCGCTTCATATGGCTGCCCGTGGTGGCTCCGTGGACTGTGTCCGGATGTTGCTTGCTTGGGGAGCAGATAGGCTGCAATTAGATTCTTTTAGGTAA 900 0.4111 MALVTPKSSSFNPTDQELVLNFLYNKINGKPLPSEATANIHQYDDLLFGEKKPWQIWEAFGGDGSDGGVLYFFSIKKKKTSRSENASWKELEEKARAKPITVKEGTKKEIIGTKKSLVWNENNNSVVSSSWIIHEYMLHQSKVDITSYSRNRVLCKLFKNHVNHALQVKTDLCNIENKQSKQLKIGADTTNSIDNNDGFKCPEIGATAPTSTFDNGGWKDASDRAKRFKTWQPLQTQCGGDDDVGNTTADNERNITLILRNTIYLGSMPLHMAARGGSVDCVRMLLAWGADRLQLDSFR 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241726g00010 299 Gene3D - 183 298 IPR036770 -
Stsc241726g00010 299 SUPERFAMILY NAC domain 4 159 IPR036093 GO:0003677|GO:0006355
Stsc241726g00010 299 SUPERFAMILY Ankyrin repeat 265 296 IPR036770 -
Stsc241726g00010 299 Gene3D NAC domain 14 164 IPR036093 GO:0003677|GO:0006355
Stsc241726g00010 299 PANTHER NAC TRANSCRIPTION FACTOR 56 9 179 - -
Stsc241726g00010 299 ProSiteProfiles Ankyrin repeat region circular profile. 265 291 - -
Stsc241726g00010 299 ProSiteProfiles Ankyrin repeat profile. 265 297 IPR002110 GO:0005515
Stsc241726g00010 299 ProSiteProfiles NAC domain profile. 5 160 IPR003441 GO:0003677|GO:0006355
Stsc241726g00010 299 Pfam No apical meristem (NAM) protein 9 138 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241726g00010 Stsc-Chr241726 74289 76427 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241726g00010 6 159 NAC Transcription Factor Family AT2G24430 29.193 6.09e-12 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc241726g00010 NAM 1.6e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241726g00010 - - adu:107495696 276.559