Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241726g00008 ATGTTGTGTGCTTGCTCAGGGGAGCAATTCAAATTCGAGGAGGCGCCGCCGCAGTCGCCGGAGTCATTGGCGACGAGGGATTTCTCGGCCAGTGGACTTTCTTCATCAAGAACTGGGGGTGATTGGGATTCTAAATTTGATCAGAACCAAGTTGAAGAAGCTGAATCAACTCTTAAAGAAGCTCTCTCTTTAAACTATGAGGAAGCTCGGGCTTTGCTGGGGAGGCTTGAATATCAAAGAGGGAACTTTGATGCTGCTCTTCAAGTTTTCCAAGGCATTGAAATCAAGGCCTTGACACCAAGGATGATAAGAGCCATCGCTGAAAGAACTAGGCCAAGAAAACAACGTTCTAGAGCTGATAATGTGGTCCCTAATGTGATGTCAATGCATTCAGTAAGCCTTCTTGTTGAGGCAATTTTGCTCAAATCCAAATCCTTAGAGGAACTCGGCCGATACACCGAGGCTGCAAGTACATGCAGCATGATTTTGGACACAGTTGAGTCTGCTCTTCCTAAGGGAATGCCGGATGGCATCGCCGAAGAGTGTAAGTTGCAAGACATGTTCCATAGAGCAATTGAACTGCTTCCAACTTTATGGATCAAGGCAGGGAATTTAGGAGAAGCTGTCACGGCTTATCGCCGTGCTTTGATCAAGCCGTGGAATATGGAGCCGGGAAAGTTGGCCAGTATGCAAAAAGATTTGGCCACCACACTACTCTATGGTGGTGTTGAAGTAGACCTGCCGCCTCAATTACAAGCGAGGTATCCCGAAACTCCAAAGAGTAACATTGAAGAAGCAATACTTTTGCTATTAGTACTCATGGAAAAGATGGTCCTTCAGGAAATAGAATGGGACAGTGAAACAGCAGATCATCTTACATTCGCACTTTCTGTTACTGGAATGTTTGAATTGTTGGCTGATTATGTAGAGCAGATCCTTCCTGGTATCTATGATCGAGCCGAGAGATGGTACTTTCTTGCTCTTTGTTACAGTGCAGCCGGTCAGGACGAAGTAGCCTTGAACTTATTGAGGAAGTCTTGTGGTAGTTCTGAAGCAAATCGCAGACCCCATTTCCCTTCATTTTTGTTTGGTGCAAAACTGTGTTCCAAATATCCAAGCCATGCTCTCGAAGGCATTAAGTTTTCCCGCGAAGCTATCGATCTGGCAAGGCTTCAAAATAAGCATTTTTTGAGTCAGGGGAAAAGTTTTCTGGGTGTTTGCTTTGGCGCTGCGGCTAGAAGATCTGTGTTGGACTCTGAAAGGACTATGTTTCAAAGGGAATCTTTGAACTTTCTAAATGAGGCTTCTATAAGTCAAAAAGATGATCCTGAAGTGATATTCAACCTTGGACTTGAAAATGCAATTCAAAGGAATCTTGATGCAGCTTTCAACAATATAATGATGTACTCGGATATGACCGTTGGTAGCTCGAGAAGGGGTTGGCAGCTATTAGCCCTCATAGTATCTGCACAACAACGGTTTAAGGATTCAGAAATGATAGTTGATTTTGCATTGGATGATACTGAAAAGATAGACCAGTTAGAACTTCTGAGGTTGAAAGCAGTACTTCAAATCGCGCAGCAGAAACCGAAGCAAGCAGTAGAGACCTACAGAATCTTGCTAGCACTGATCCAATCTAAAAAGGAGCCTTGGCATCAAGCTAAGAAGAACTTTGATCAGGCAAAAGCATTCACACATGAGGCACTTCCTGAAAGGAAGTTGGAAATGGAAGCATGGCAGGATTTGGCAACCATATATGCAGACTTTAGTTCCTTTCTTGATGCAAAAGCTTGTCTTGACAAAGCTCAGTCAATTGAATTTTTCTCTCCCAGAAGTTGGCACATTACTGGAATGTTATTTGAAGCACAATCATTATACAAGGAAGCCTTTGTTTCATTCTCAGTCTCATTGGCAATAGAACCTNNNNNNNNNNATTGA 1938 0.4314 MLCACSGEQFKFEEAPPQSPESLATRDFSASGLSSSRTGGDWDSKFDQNQVEEAESTLKEALSLNYEEARALLGRLEYQRGNFDAALQVFQGIEIKALTPRMIRAIAERTRPRKQRSRADNVVPNVMSMHSVSLLVEAILLKSKSLEELGRYTEAASTCSMILDTVESALPKGMPDGIAEECKLQDMFHRAIELLPTLWIKAGNLGEAVTAYRRALIKPWNMEPGKLASMQKDLATTLLYGGVEVDLPPQLQARYPETPKSNIEEAILLLLVLMEKMVLQEIEWDSETADHLTFALSVTGMFELLADYVEQILPGIYDRAERWYFLALCYSAAGQDEVALNLLRKSCGSSEANRRPHFPSFLFGAKLCSKYPSHALEGIKFSREAIDLARLQNKHFLSQGKSFLGVCFGAAARRSVLDSERTMFQRESLNFLNEASISQKDDPEVIFNLGLENAIQRNLDAAFNNIMMYSDMTVGSSRRGWQLLALIVSAQQRFKDSEMIVDFALDDTEKIDQLELLRLKAVLQIAQQKPKQAVETYRILLALIQSKKEPWHQAKKNFDQAKAFTHEALPERKLEMEAWQDLATIYADFSSFLDAKACLDKAQSIEFFSPRSWHITGMLFEAQSLYKEAFVSFSVSLAIEPXXXX 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241726g00008 645 MobiDBLite consensus disorder prediction 22 45 - -
Stsc241726g00008 645 SUPERFAMILY TPR-like 481 639 IPR011990 GO:0005515
Stsc241726g00008 645 Coils Coil 59 79 - -
Stsc241726g00008 645 Gene3D Tetratricopeptide repeat domain 425 644 IPR011990 GO:0005515
Stsc241726g00008 645 Gene3D Tetratricopeptide repeat domain 42 347 IPR011990 GO:0005515
Stsc241726g00008 645 MobiDBLite consensus disorder prediction 14 50 - -
Stsc241726g00008 645 Pfam Tetratricopeptide repeat 44 92 - -
Stsc241726g00008 645 PANTHER PROTEIN NPG1 1 642 IPR043376 -
Stsc241726g00008 645 SUPERFAMILY TPR-like 46 465 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241726g00008 Stsc-Chr241726 53482 56379 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241726g00008 1 641 Calmodulin-binding Proteins AT1G27460 58.320 0.0 753
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241726g00008 K21843 - gmx:100795958 978.008