Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241725g00021 ATGTTGTCTTCATGGAACCTCTCAAATAAAACAAGTCCATGCAATTGGAATGGCATCAAATGTAACAATGGTGGAAGTGTTGTTGAGATAAAGCTTCCAAATTCAGGCCTAGATGGAACCCTCAACAGGTTTGATTTCTCTTCTTTTCCTAATCTCACCACACTCAATCTCAACATGAACAACCTTGTTGGAAAAATCCCATCTGAGATAGCAAACTTGACAAATTTGCAAGTTCTTGATCTTAGTAGCAACAATTTCACATATCAAATGCCACCAGAAATAGGTAACCTCTTAGAGCTGCAAGTTCTAATCCTATCAAACAATTCACTGTTGCAACAAATTCCATATCAAGTTAGCAATTTGCAGAATCTAAGGATTCTTGAACTAGGTGGTAACTATCTAGAGAATCCTGACCCAAAATTCAAGGGCATGGCATCCATAACAGACCTTAACCTCACATACAACTCTCTCACAGAATTTCCACCGTTTGTTTTTGAATGCCCAAAGCTTGTATCTCTTGATCTTTCAATGAACACTATTGGGAAAATTCCAATTCAATTGTTCAACACTCTCAAGAAACTTACAAACCTTGTCCTTACACAAAACCAATTAGAGGGGCCAATTCCAACAGATATTAAGAATCTTTCAAAGCTTAAACAACTAAGTCTTGGACTTAACCTGCTAAATGGTACAATACCAAAGGAGATAGGTCTATTGTCATCACTTGAGATTCTTGAATTGCATGGAAATTCCTTGCAAGGACCAATACCATCTTCAATTGGAAATCTTACAATGCTTCAGAGATTGGATCTTGATGGCTCAGGGGTAAATTCTAGCATTCCAGATGAAATAGGCTTCTGCAGAAACCTTACTTTTATCGGTATGTCCAAGAATAACCTCACAGGTTCCATACCTCTTTCAATGGCTTCACTAACAAGAATCAAAGAGTTAGGACTATCTGATAACCATTTATCTGGAGAACTTCATCCATCTCTTCTTTCCAATTGGAAAGAAATCAGATCCTTGCAACTCCAACAGAATGATCTGTCAGGAAAACTTCCTCCTGAGATTGGTTTGCTTCAAAATCTTACTCTCTTGTACCTATACTCCAACAAGTTTTCTGGACCAATCCCACCAGAAATTGGAAACTTATCAAGCATAGAAGATCTTGAACTTCCCAACAACAATTTCAATGGTTCTATACCATCAACTATTGGAAAGTTGAAGAGCCTCACCGTGTTAGCACTGGCCACAAATCAACTCAGTGGAATCCTTCCTCCTGAAATAGGTGATTTGGAAAGCCTGCAATACCTGGACTTGAGTCAAAACAAGCTCATAGGATCTTTGCCCTCATCAATTGTCCGTTTGGAGAATCTCAATCTGCTTTATCTTCATGACAACCATTTCTCAGGAAGTATTCCACAAGATTTTGCACCTTCTTTGTTAAGCAATTTGACCTTTGCTAACAATAGCTTCTCCGGGAAGCTACCTTCAGGAGTATGCAGGGGAGGGAATCTTGTCTACTTAGCTGCCAATCAGAACAATCTAGAAGGTCCAATCCCAGAAAGCCTGAGAAACTGCACTGGACTAATCAGAGTTCGTCTTGAGAAGAACTCTCTTAGTGGAGATATCACGAATGCATTCGGCATATACCCGGATCTGAACTTCATTGATTTAGGACAAAATCAGCTTTCTGGTTTGTTGACAAGTAACTGGGGAAAGTGCAAAAGTCTCTCAAGTTTTAGCATATCTTCCAATAAGATACAAGGGAACATCCCTCCTGAGCTTGGAAGTTTGCCAAAGCTACAAAATCTTGATCTCTCCAACAACAATCTAACAGGAAGCATCCCAGTGAAGCTCTTCAGTCCATCTTCCAAGCTGCTTAAGCTGAACATGAGCAGCAACAATCTTTCGGGTCAGATACCGGCCAGCATTGGAGCACTTTCACAGCTGCAGGTTCTGGATTTATCAGAAAACAATCTGAGAGGGTCAATTCCAAAAGAACTTGGAAGCTGCAGAAGGCTTATATCACTGAAGTTGAGTATGAACCAGTTAGATGGGAATATGCCGGTTGAGCTCGGGAATTTAGTGGAGTTGCAGCCTCTGTTGGATCTCAGCCATAACTCACTGAGTGGACAGATAATCCCACAGCTCGGAAATCTGATAGCTTTGGAAGTTTTGAACCTGTCCCATAATCAGCTTTCTGGGGCAATTCCTTCTTCTTTGGAAGGACTAATAAGCCTTCAGTCAGTGGATATTTCCTATAACAAACTTGTAGGTCCCCTCCCGGACCTAACTGCTTTTCAAAATGCTTCTTCCGAAGCTCTAGTTGGCAATGCAGGTTTGTGTGATGGTACTGCTAGCAATAGCAAAGCAAATTTGAGTCCTTGTGTTGGAAGCAAAAGCAGCAAATCAAATAAGCATAAGGTGATCATTGCAGTAGTCATTCCACTTGCTGTTTTAGTCATTCTATTTGTTTCCCTTGGAGTCTTCGCCTTGCTGCGCTACAAGAGAGTCGATCAAGAAGAAGAGGACAAGAGTGAAGGTGGAAAGGACTCATTCTTTGTATGGAATCACAGGAGCATGGTAGAGTTTAAGGACATGCGCAAGGCAACTGAGAACTTTGGTGACAAGTACTGCATAGGCATAGGAGGACAGGGCAGTGTATACAAAGCAATGCTTCCAACAGGTGATGTCTTCGCAGTGAAGCGTCTCCACCAAAATGAGGATATAGACTTCTCCGGACACCAGACAAAGAATTTCATGTCTGAAGTTCATGCATTAACTAATATTCGCCACCGCAACATTGTAACAATGTGTGGTTTTAGTTACTCGGACGGGTCTATATTTTTCATATATGAGCATGTGGAGAGAGGCTCTTTGCTGAAGTTGTTGCAGGACGACGAGGAGGCGAAGATGTTGACCTGGGACATCAGGCTGAACATAATAAAAGGATTAGCAAATGCATTGTCTTACCTGCACCATGACTGCAAGCCAAGCATTGTTCACAGAGACATAACAGGAAACAACATTCTCTTGGACACTGATTATGAGCCTAAAATATCTGATTTTGGGACTGCAAGGTTGCTGAAAGAAGGAGAATCAAATTGGACAGCTCCTGCGGGATCATACGGCTATATAGCACCAGAGCTTGCATTTACCATGAAAGTGACAGAAAAATGTGATGTATATAGTTTCGGAATTGTTGCATTAGAGATTTTGGCAGGGAAGTACCCTCATGAACTGCTTTTGTGTCTAGAATCTGGGGGATTTGATCAACACCTTGTGGATTTCTTAGATAAGAGAATAGATCCTCCAACAAGAAATTCTATTCCACTCCTAGTATTGGTGGCAAGGATGATTCTAAAATGTGTTGACAAAGATCCTTTGGCAAGACCAACCATGCACCAAGTATCCCAAGAGCTTTCATCGTCTACTTGGTCATCTTCTGACCCATTGAGAATGATCAAATTGGAGAACTTACTAGACATGTAA 3495 0.41 MLSSWNLSNKTSPCNWNGIKCNNGGSVVEIKLPNSGLDGTLNRFDFSSFPNLTTLNLNMNNLVGKIPSEIANLTNLQVLDLSSNNFTYQMPPEIGNLLELQVLILSNNSLLQQIPYQVSNLQNLRILELGGNYLENPDPKFKGMASITDLNLTYNSLTEFPPFVFECPKLVSLDLSMNTIGKIPIQLFNTLKKLTNLVLTQNQLEGPIPTDIKNLSKLKQLSLGLNLLNGTIPKEIGLLSSLEILELHGNSLQGPIPSSIGNLTMLQRLDLDGSGVNSSIPDEIGFCRNLTFIGMSKNNLTGSIPLSMASLTRIKELGLSDNHLSGELHPSLLSNWKEIRSLQLQQNDLSGKLPPEIGLLQNLTLLYLYSNKFSGPIPPEIGNLSSIEDLELPNNNFNGSIPSTIGKLKSLTVLALATNQLSGILPPEIGDLESLQYLDLSQNKLIGSLPSSIVRLENLNLLYLHDNHFSGSIPQDFAPSLLSNLTFANNSFSGKLPSGVCRGGNLVYLAANQNNLEGPIPESLRNCTGLIRVRLEKNSLSGDITNAFGIYPDLNFIDLGQNQLSGLLTSNWGKCKSLSSFSISSNKIQGNIPPELGSLPKLQNLDLSNNNLTGSIPVKLFSPSSKLLKLNMSSNNLSGQIPASIGALSQLQVLDLSENNLRGSIPKELGSCRRLISLKLSMNQLDGNMPVELGNLVELQPLLDLSHNSLSGQIIPQLGNLIALEVLNLSHNQLSGAIPSSLEGLISLQSVDISYNKLVGPLPDLTAFQNASSEALVGNAGLCDGTASNSKANLSPCVGSKSSKSNKHKVIIAVVIPLAVLVILFVSLGVFALLRYKRVDQEEEDKSEGGKDSFFVWNHRSMVEFKDMRKATENFGDKYCIGIGGQGSVYKAMLPTGDVFAVKRLHQNEDIDFSGHQTKNFMSEVHALTNIRHRNIVTMCGFSYSDGSIFFIYEHVERGSLLKLLQDDEEAKMLTWDIRLNIIKGLANALSYLHHDCKPSIVHRDITGNNILLDTDYEPKISDFGTARLLKEGESNWTAPAGSYGYIAPELAFTMKVTEKCDVYSFGIVALEILAGKYPHELLLCLESGGFDQHLVDFLDKRIDPPTRNSIPLLVLVARMILKCVDKDPLARPTMHQVSQELSSSTWSSSDPLRMIKLENLLDM 1164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241725g00021 1164 Gene3D Ribonuclease Inhibitor 407 481 IPR032675 -
Stsc241725g00021 1164 Pfam Leucine rich repeat 600 661 IPR001611 GO:0005515
Stsc241725g00021 1164 Pfam Leucine rich repeat 387 445 IPR001611 GO:0005515
Stsc241725g00021 1164 FunFam Leucine-rich repeat receptor protein kinase MSP1 838 955 - -
Stsc241725g00021 1164 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 479 798 - -
Stsc241725g00021 1164 SUPERFAMILY L domain-like 328 567 - -
Stsc241725g00021 1164 SUPERFAMILY L domain-like 524 784 - -
Stsc241725g00021 1164 ProSiteProfiles Protein kinase domain profile. 875 1148 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241725g00021 1164 Gene3D Ribonuclease Inhibitor 142 331 IPR032675 -
Stsc241725g00021 1164 Gene3D Ribonuclease Inhibitor 482 793 IPR032675 -
Stsc241725g00021 1164 SMART LRR_sd22_2 73 99 - -
Stsc241725g00021 1164 SMART LRR_sd22_2 360 392 - -
Stsc241725g00021 1164 SMART LRR_sd22_2 575 607 - -
Stsc241725g00021 1164 SMART LRR_sd22_2 432 461 - -
Stsc241725g00021 1164 SMART LRR_sd22_2 648 669 - -
Stsc241725g00021 1164 SMART LRR_sd22_2 191 217 - -
Stsc241725g00021 1164 SMART LRR_sd22_2 721 747 - -
Stsc241725g00021 1164 SMART LRR_sd22_2 121 146 - -
Stsc241725g00021 1164 SMART LRR_sd22_2 239 265 - -
Stsc241725g00021 1164 Gene3D Ribonuclease Inhibitor 1 141 IPR032675 -
Stsc241725g00021 1164 PRINTS Leucine-rich repeat signature 648 661 - -
Stsc241725g00021 1164 PRINTS Leucine-rich repeat signature 602 615 - -
Stsc241725g00021 1164 Pfam Protein kinase domain 880 1140 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241725g00021 1164 Gene3D Transferase(Phosphotransferase) domain 1 956 1154 - -
Stsc241725g00021 1164 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 262 352 - -
Stsc241725g00021 1164 FunFam Probable leucine-rich repeat receptor-like protein kinase At5g63930 353 451 - -
Stsc241725g00021 1164 Gene3D Ribonuclease Inhibitor 332 406 IPR032675 -
Stsc241725g00021 1164 ProSiteProfiles Leucine-rich repeat profile. 601 623 IPR001611 GO:0005515
Stsc241725g00021 1164 FunFam Os07g0541700 protein 956 1041 - -
Stsc241725g00021 1164 SUPERFAMILY L domain-like 12 326 - -
Stsc241725g00021 1164 Pfam Leucine rich repeat N-terminal domain 2 22 IPR013210 -
Stsc241725g00021 1164 Pfam Leucine Rich repeats (2 copies) 50 85 IPR025875 -
Stsc241725g00021 1164 Pfam Leucine Rich repeats (2 copies) 724 765 IPR025875 -
Stsc241725g00021 1164 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 29 158 - -
Stsc241725g00021 1164 FunFam Nuclear pore complex protein NUP107 1 140 - -
Stsc241725g00021 1164 SMART LRR_typ_2 168 190 IPR003591 -
Stsc241725g00021 1164 SMART LRR_typ_2 408 431 IPR003591 -
Stsc241725g00021 1164 SMART LRR_typ_2 144 167 IPR003591 -
Stsc241725g00021 1164 SMART LRR_typ_2 121 143 IPR003591 -
Stsc241725g00021 1164 SMART LRR_typ_2 215 239 IPR003591 -
Stsc241725g00021 1164 SMART LRR_typ_2 432 456 IPR003591 -
Stsc241725g00021 1164 SMART LRR_typ_2 263 287 IPR003591 -
Stsc241725g00021 1164 SMART LRR_typ_2 721 745 IPR003591 -
Stsc241725g00021 1164 SMART LRR_typ_2 49 72 IPR003591 -
Stsc241725g00021 1164 SMART LRR_typ_2 73 97 IPR003591 -
Stsc241725g00021 1164 SMART LRR_typ_2 311 335 IPR003591 -
Stsc241725g00021 1164 SMART LRR_typ_2 648 672 IPR003591 -
Stsc241725g00021 1164 SMART LRR_typ_2 360 384 IPR003591 -
Stsc241725g00021 1164 SMART LRR_typ_2 599 623 IPR003591 -
Stsc241725g00021 1164 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 193 261 - -
Stsc241725g00021 1164 SUPERFAMILY Protein kinase-like (PK-like) 855 1142 IPR011009 -
Stsc241725g00021 1164 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1001 1013 IPR008266 GO:0004672|GO:0006468
Stsc241725g00021 1164 Gene3D Phosphorylase Kinase; domain 1 837 955 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241725g00021 Stsc-Chr241725 113060 116748 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241725g00021 2 617 Receptor kinase-like Gene Family AT4G08850 34.887 6.09e-87 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc241725g00021 Pkinase 9.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241725g00021 - - ccaj:109803789 1538.47