Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241725g00020 ATGGCGGGGTCGGGAAAGATTATAGCTGTTGCTGTTTCAATTCTGCTGGTAGTAGGAGTTGTTATTGGTGCCGTGGTGGCTGTGAATCACCTGGACAACGGCAGCAGCAACAATGGAGGAGAGGTGAAGACAACAAACAAGGCGGTGACTGCAGTGTGCCAAGGCGCCGACGACGAGAAGCTCTGCCACGACGTATTGGCACCTGTGAACACATCAAATCCCAAGGACTACATTACGCAGGTGGTGAAATTCTCCACCGACAGCGTCTTGAAAGCCCTGAACATGAGCGACAGGCTCATGGTGGAGAACGTCGCCAACGGCACCGACGGAGGAATCAAGATGGCTTTGGACGACTGCAAGGACCTCCTGCAATCTGCGATCCACGAGCTGGAAGCCTCCGGCGTATTTGTGGATAGCCAGTCGCTTCCGGAAGTGTTCACAAACAGTGCCGAGCTCAAGAACTGGCTGGGGGCGGTTATCGCGTACCAGCAATCTTGCCTGGACGGGTTCGAAACCGACGGGGAGAAGCAGATCCAAGGTCAGTTGCAGAGCGAGAGCTTGGACAGCGTGATGAAGCTCACCGCCTTGGCTCTGGATGTTGTGTCTGGTATCTCGAAGGTTCTGTCTGAGTTTGGGTTGAACTTGACTAACAGGCCGGTTCGTCGCCTCCTTGAGATTGATAGCGATGGCTTCCCAACCTGGTTCGGTTTCCATGAGCGTAAGCTGGTAAACGAGGCCAAACAGGGCTCCATCGTCCCTAACGTCGTGGTTGCCAAGGATGGTAGCGGACAATACAAGACTATTTTGGATGCCATTAACGCTTACCCCAAGAAACACAAAGGCAGGTGGGTTATCTATGTTAAGGCTGGTATCTACGACGAGTACATCACCGTTGACAAGAAGAAGCCTAACATCTATATGTACGGTGATGGCCCCTCCAAGACCATCATCACCGGTCGCAAGAACTTCGCCGAGGGTGTCAAGACCATGAGAACCGCCACCTTCACCACCGTTGCGGAGGGGTTCCTTTGTAAGGGTATTGGGTTCGAGAACACAGCAGGTCCAAGTGGACACCAAGCAGTGGCCCTCCGAGTGATGGGTGACCGCTCAGCCTTCTTCGACTGCGCATTCCGTGGCTACCAAGATACCTTGTACGCCCATGCTCACCGTCAGTTCTACAGCAACTGCGAGATTAGCGGCACCATAGACTTCATCTTCGGCTACGCTTCAACCTTCGTCCAGAACTCCAAGATCATCGTTAGGAAGCCCAAGGAAAACCAGCAGAACATCATCGTCGCCGACGGTACCGATCAGAAGAACATGCCATCAGGAGTTGTTCTCCACAACTGCCAGATCATTGCAGATCCAAGCCTGGCAGCAGAGAACGGAAAGATAAGGACCTTCTTGGCAAGGCCATGGAAGGCATACTCAAGGGCAGTGTTCATTGAGAATACCATCGGTGGCTTCATCCACAAGGATGGTTACATTCCATGGCAACCAGCTAGCCCTAACACCGAGCACTCATACTTTGCTGAGTTCGGAAACATTGGTGCTGGTTCTGATGCTTCTGGAAGGATCAAGTGGGCCAAGGGTCTCATCTCCAAGAATGAGGCTTCTAAGTTCACTCTTGACAGATTCCTCCAAGCTAGCTCATGGTTGCCTGCTACTGGTTTTGCTTTTGATTCCAGCTTCACCAAGAACTAA 1704 0.5241 MAGSGKIIAVAVSILLVVGVVIGAVVAVNHLDNGSSNNGGEVKTTNKAVTAVCQGADDEKLCHDVLAPVNTSNPKDYITQVVKFSTDSVLKALNMSDRLMVENVANGTDGGIKMALDDCKDLLQSAIHELEASGVFVDSQSLPEVFTNSAELKNWLGAVIAYQQSCLDGFETDGEKQIQGQLQSESLDSVMKLTALALDVVSGISKVLSEFGLNLTNRPVRRLLEIDSDGFPTWFGFHERKLVNEAKQGSIVPNVVVAKDGSGQYKTILDAINAYPKKHKGRWVIYVKAGIYDEYITVDKKKPNIYMYGDGPSKTIITGRKNFAEGVKTMRTATFTTVAEGFLCKGIGFENTAGPSGHQAVALRVMGDRSAFFDCAFRGYQDTLYAHAHRQFYSNCEISGTIDFIFGYASTFVQNSKIIVRKPKENQQNIIVADGTDQKNMPSGVVLHNCQIIADPSLAAENGKIRTFLARPWKAYSRAVFIENTIGGFIHKDGYIPWQPASPNTEHSYFAEFGNIGAGSDASGRIKWAKGLISKNEASKFTLDRFLQASSWLPATGFAFDSSFTKN 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241725g00020 567 Gene3D - 248 564 IPR012334 -
Stsc241725g00020 567 FunFam Pectinesterase 248 564 - -
Stsc241725g00020 567 NCBIfam pectinesterase inhibitor domain 36 200 IPR006501 GO:0004857
Stsc241725g00020 567 CDD PMEI-like_3 51 206 - -
Stsc241725g00020 567 SUPERFAMILY Pectin lyase-like 254 561 IPR011050 -
Stsc241725g00020 567 ProSitePatterns Pectinesterase signature 2. 398 407 IPR033131 -
Stsc241725g00020 567 SMART PMEI_2 44 200 IPR006501 GO:0004857
Stsc241725g00020 567 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 46 201 IPR035513 -
Stsc241725g00020 567 Pfam Pectinesterase 254 549 IPR000070 GO:0030599|GO:0042545
Stsc241725g00020 567 PANTHER PECTINESTERASE 12 554 - -
Stsc241725g00020 567 Pfam Plant invertase/pectin methylesterase inhibitor 48 199 IPR006501 GO:0004857
Stsc241725g00020 567 Gene3D Invertase/pectin methylesterase inhibitor family protein 43 205 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241725g00020 Stsc-Chr241725 108096 109880 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241725g00020 5 553 Carbohydrate Esterase AT3G62170 37.182 7.16e-125 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241725g00020 K01051 - gmx:100808559 767.689