Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241725g00018 ATGGCTTCTGAGGCCACCACCTCCAAAGCCACCGTGCCGGCTCTGTCGCTCACGGCAGCGGAAACGCAGTATTCGTCGGCGAAGGTCTCAGTATGGTGGGACATAGAGAACTGCCCGGTGTCTCGTGGCTGCGACGCGCATTCCATCGCAAAGAACATCAGCTCCGCTCTGGTTCGCATGAACTACTGCGGCCCCGTCTCCATTTCTGCGTACGGCGACACCAACCGCCTTCAGTCGTCTGTACAGCACGCGCTCTCCAGCACCGGCATCTCCCTCAACCACGTCCCCGCAGGTGTGAAAGATGCAAGTGACAAGAAGATTTTAGTTGATATGCTATTCTGGGCGGTGGACAACCCTGCTCCTGCAAATTATTTGCTTATTTCTGGAGATAGGGATTTTTCCAGTGCCCTGCATCAACTGCGTTTGAGAAGGTACAACATTCTTCTTGCTCAACCGGTAAAAGCATCCGCGCCCCTCATTGCTGCTGCTCGGAGTGTGTGGCTCTGGACTAGTCTTTCTGCCGGTGGGCCACCGCTACCCGGTGGCACCTCGTCAAGCATTGCAATTAGTAACCAAAGCTGTGGTTCTGGAACGGTTCAAAACCCTCTTCCATCTCAACCTAAATACAAAGAAAAATACACCAACAGCAATGCAAGTCAGCACAACAGCATGCCAATTCAATTTCCAGAGAGTAATTGCTCTAGTCTGGAACTTCCACAGGCAAAGTTGTTTCCCAGAGCTCCCCATGAATTCTTTAGTAATAAGGCCAATACCGCGACTGTTAGTTCTACATCTAGTCTTCCAAGCAATCAAGACCATCAGGAATCTAGACAAGATTATATAGCAAGTAGTAGTAATAACCCACATGCCAGCCAAGCATCTCGTTATGAGAATGTGGACAAGGGGTCTTCTCACAATTCTGAACAGTCTGGCAATACCTGGGGAGCTAAAATTCTACGACCACCTTCTGAGTATGACCAACATCTTATAGGCTGCATTCTATTAACTTTGAACACTCTGAAAGTTGAAAAGGTTATGCCTACTCATGGAAATATTTCCGATTGCATCCGATACGGAGATCCCAGATACCGGAAAATTGATGTCAGGAAAGCTTTAGATTGTGCAATAGAGCATGGCATGGTAGTAAAACAAAGCTTAGGTTCATTGAGTTTATATGTTTATAAAAATGAGCAACTCTGGAATTGCGTGAACCCTGTTGGTGGTTATCCTAATGATTTCTCAGACGCAACATGGGCTAGAATACGGCAATTCCTTTCTTCACCAGCTGGAAAATCGTCGATTTCGGCAACCCATTGCAGATACGAAGCATCGCTAGTTCTTAGGAGATCATGCATGGAAGAGGAGGTTTTAGGTAATGTACTTAAGATTCTGGAGATGATAATCTCAGTCAAGAAGTGGATTATACATAACCATTCCGGGTGGCAGCCAATTACTATTGCACTTTAA 1467 0.4676 MASEATTSKATVPALSLTAAETQYSSAKVSVWWDIENCPVSRGCDAHSIAKNISSALVRMNYCGPVSISAYGDTNRLQSSVQHALSSTGISLNHVPAGVKDASDKKILVDMLFWAVDNPAPANYLLISGDRDFSSALHQLRLRRYNILLAQPVKASAPLIAAARSVWLWTSLSAGGPPLPGGTSSSIAISNQSCGSGTVQNPLPSQPKYKEKYTNSNASQHNSMPIQFPESNCSSLELPQAKLFPRAPHEFFSNKANTATVSSTSSLPSNQDHQESRQDYIASSSNNPHASQASRYENVDKGSSHNSEQSGNTWGAKILRPPSEYDQHLIGCILLTLNTLKVEKVMPTHGNISDCIRYGDPRYRKIDVRKALDCAIEHGMVVKQSLGSLSLYVYKNEQLWNCVNPVGGYPNDFSDATWARIRQFLSSPAGKSSISATHCRYEASLVLRRSCMEEEVLGNVLKILEMIISVKKWIIHNHSGWQPITIAL 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241725g00018 488 MobiDBLite consensus disorder prediction 180 231 - -
Stsc241725g00018 488 MobiDBLite consensus disorder prediction 260 315 - -
Stsc241725g00018 488 Pfam NYN domain 28 164 IPR021139 GO:0004540
Stsc241725g00018 488 PANTHER LIMKAIN B LKAP 22 369 IPR024768 GO:0005777|GO:0010468
Stsc241725g00018 488 Gene3D - 19 171 - -
Stsc241725g00018 488 CDD PIN_limkain_b1_N_like 28 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241725g00018 Stsc-Chr241725 101586 103683 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241725g00018 17 207 C2H2 Transcription Factor Family AT5G61190 66.667 4.08e-82 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241725g00018 - K17573 aip:107646579 763.451