Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241725g00017 ATGAGTTGTTTCAGCTGCTGTGAAGGCGATGACTTGCACAATGCTACTGATAGTGGTGCGCCATATGCTGTGAAAAATTCAGCAGGAAACGATGGAAATCATCATGCTTCAGAAACTGCAAAGCAGGGGGCTCAAACTGTTAAAGTTCAGCCCATTGAAGTTCCCGCTATACCAGTGGATGAACTAAAAGAAATTACAGATAACTTTGGGGAAAATGCCCTGATTGGAGAGGGTTCCTATGGAAGAGTATATCACGGTGTTCTTAAAAGTGGGCAGACTGCAGCAATAAAGAAGTTAGATGCCAGTAAACAGCCTGATGATGAATTTTTAGCCCAGGTTTCAATGGTTTCAAGGCTGAAGCATGACAATTTTGTTCAATTGCTTGGTTATTGTGTTGATGGAAACTCCCGTGTTCTTGCTTATGAGTATGCATCTAATGGTTCTCTGCATGATATTCTACATGGTAGAAAAGGAGTTAAAGGAGCACAACCTGGTCCTGTTTTGACCTGGGCACAGAGAGTTAAAATTGCTGTAGGGGCTGCAAAAGGGCTCGAGTATTTGCATGAGAAGGCTGATCCCCACATTATCCACCGGGATATCAAGTCAAGCAATGTTCTAATATTTGATGATGATGTTGCAAAAATTGCAGATTTTGATTTGTCAAACCAGGCCCCTGACATGGCAGCGCGTCTTCATTCAACCCGTGTCCTTGGAACCTTCGGTTATCATGCACCAGAATATGCAATGACTGGGCAATTGAATGCTAAGAGTGATGTATACAGTTTTGGTGTTGTCCTTCTGGAGCTTTTGACAGGAAGGAAACCTGTTGATCATACATTACCACGTGGGCAGCAAAGCCTTGTTACTTGGGCTACTCCAAAACTCAGTGAGGATAAAGTCAGGCAGTGTGTAGATGCAAGATTAGGAGGAGATTACCCCCCCAAAGCTGTTGCTAAGTTGGCTGCTGTTGCTGCACTGTGTGTGCAATACGAAGCTGATTTCAGACCAAACATGAGCATTGTAGTCAAAGCTCTGCAACCTTTGTTGAATGCACGACCTGGCCCTGCTGGTGAAACACCAAACTAA 1086 0.4392 MSCFSCCEGDDLHNATDSGAPYAVKNSAGNDGNHHASETAKQGAQTVKVQPIEVPAIPVDELKEITDNFGENALIGEGSYGRVYHGVLKSGQTAAIKKLDASKQPDDEFLAQVSMVSRLKHDNFVQLLGYCVDGNSRVLAYEYASNGSLHDILHGRKGVKGAQPGPVLTWAQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPKLSEDKVRQCVDARLGGDYPPKAVAKLAAVAALCVQYEADFRPNMSIVVKALQPLLNARPGPAGETPN 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241725g00017 361 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Stsc241725g00017 361 SMART serkin_6 69 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241725g00017 361 Gene3D Phosphorylase Kinase; domain 1 29 143 - -
Stsc241725g00017 361 Pfam Protein tyrosine and serine/threonine kinase 74 345 IPR001245 GO:0004672|GO:0006468
Stsc241725g00017 361 SUPERFAMILY Protein kinase-like (PK-like) 48 345 IPR011009 -
Stsc241725g00017 361 FunFam PTI1-like tyrosine-protein kinase 3 33 143 - -
Stsc241725g00017 361 PIRSF ILK 22 352 - -
Stsc241725g00017 361 CDD STKc_IRAK 75 348 - -
Stsc241725g00017 361 FunFam pto-interacting protein 1 145 356 - -
Stsc241725g00017 361 Gene3D Transferase(Phosphotransferase) domain 1 144 353 - -
Stsc241725g00017 361 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 4 353 - -
Stsc241725g00017 361 ProSiteProfiles Protein kinase domain profile. 69 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241725g00017 361 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241725g00017 Stsc-Chr241725 92113 95895 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241725g00017 48 352 Receptor kinase-like Gene Family AT3G58690 48.065 1.76e-89 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Stsc241725g00017 PK_Tyr_Ser-Thr 6.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241725g00017 K13436 - tcc:18613791 667.537