Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241725g00016 ATGGAAGCTAGATTTGGTAGTGAAGCTCTTCAATTCTATGCTATGGGTGGGTCCTCAGTGGGGAAGAGGTCCATGGAGTGGGATTTGAATGATTGGAAATGGGACGGTGATCTATTCATAGCTAGGCCTTTGAATCCTGGACCTGAACACAGGCAATTCTTCCCTGCTGGCACTGGGATCCCTGTTTCTGGGGCTCCCTCCAACTCTAATAGCTCATCCTCGTGTTCTGATGAGGTAGATCTCGGGGTTCGTGGAGGGAACAAGGAAGGGGACAAGAAAAGGAGGGTTGTTGTGCTGGAGGATGATGCTTTGAATGAGGAATCTGGTACCCTTAGCTTAAAGCTTGGCGGTGGCAGTGGCAGCGGCGGGCATGGTGGTGCCAATATTGGTAGCTGGGAAGGAGGGAACGGAAAGAAGAGCAGAGTAGCTGGAGGCAATTCGAATCGGGCTGTTTGCCAGGTGGAGGATTGTGGTGCAGATCTCAGCAATGCTAAAGATTATCATAGGCGCCATAAAGTTTGTGAGATGCACTCCAAGGCCACTAAGGCACTTGTGGGAAATGCAATGCAACGATTCTGCCAACAATGTAGTAGGTTTCATATGCTCCAAGAGTTTGATGAAGGAAAGAGAAGCTGTCGAAGACGTTTGGCAGGCCACAATAAGAGGAGGAGGAAAACAAATAATGAAGCTGTTCCTAATGCAAGTTCACTAAATGATGATCAGACAAGTAGTTACCTTCTGATAAGTTTATTGAAGATACTTTCAAACATGCATTCTGACAGGTCAGATCAGACCACGGATCAGGATCTGCTGACTCACTTGCTTAGGAGTCTTGCTAGTCAAGGTGGTGATCAAGGGGGTAAGAACTTGTCGAACCTTTTGGCTCAACCAGAGAATTTGTTGAAAGAAGGGAGCTCATCTGGGAAGTCTGAGAATGCTTCTACTTTACTCTCCAATGGATCTCAAGGCTCTCCATCTGTAATTCAACAGCATCAAACAGTTTCTGTAGCTGAACTCCAACATCAGGTGATGCATGCACATGATGTTATGCCCACTGATCAAATCATGTCTTCTACAAAGCCCAGCGCTTCAAATAGTCCTCCAACTTACTCAGAAGCCCGAGACAGTACTGCTGGACAGACAAAGATAAACAATTTTGATTTGAATGACATATATGTCGACTCAGATGATGGCATAGAAGATATTGAAAAGTTGCCTGTCTCTGCTAATCTTGGTACTAGCTCTCTTGAATACCCATGGACACAACAAGACTCTCATCAGTCAAGTCCACCTCAAACAAGTGGCAACTCAGATTCTGCATCTGCTCAGTCCCCTACTAGTTCTAGTGGAGAAGCTCAGAGTCGCACAGATCGAATTGTTTTCAAACTATTTGGTAAAGAACCAAATGATTTCCCTCTCGTACTTAGAGCACAGATTCTTGACTGGTTATCCCACAGTCCAACTGACATGGAAAGTTACATACGGCCTGGTTGTATTGTTTTGACCATTTATCTGCGCCAGTCTGAAGCTATGTGGGAGGAGGTAAGCTCTGTCCTAAAACTAATAGCATATGTTGATTTTTGGAGGACTGGATGGGTTCACATCCGGGTGCAGCATCAGCTAGCATTTGTTTTCAATGGTCAGGTTGTCATAGATACATCCTTACCTTTCAGAAGTAACAATTATAGCAAGATTCTTAGTATTAGTCCAATTGCTGTACCAGCATCAAAGACCGCTCAATTTTCTGTCAAGGGTATCAACCTGAATCGCCCCGCCACTAGGTTATTGTGTGCTTTAGAAGGGAGTTATCTAGCTTGTGAAGATGCTCATGAGTCGATGGATCCAGGCTCCAAGGAGCTTGAAGAGCTTCAATGCATCCAATTTTCATGTTCTGTCCCCGTGATAAATGGAAGAGGATTTATTGAGATTGAGGATCAGGCCATGGATTTCATTCATGAAATGGGTTGGCTTCTTCACAGAAGCCAATTGAGATCAAGGATGGTTCACTTGAACTCCAGTGTAGAACTCTTCCCATTGAAACGATTCAAGTGGCTCGTTGAGTTCTCTGTGGACCGTGATTGGTGTGCTGTAGTGAAAAAACTACTGAACCTACTGCTTAGTGGAATTGTGTGCACAGGAGATCACCAATCAATCCATCTGGCACTTTCAGAGATGGGTCTCCTTCATAAAGCTGTCAGGAGAAATAGCAGGCAATTGGTGGAGCTACTTTTGAGATATGTTCCCGTGAATATTTCTGACAAACTAGGATATGAAGACGTGTCTCTGGTTGGAGGAGAGAACCGGAGTTTCTTGTTTAGACCTGATGCCGCGGGTCCTGCTGGTTTGACACCACTCCATATAGCAGCTGGGAAAGATGGTTCAGAGGAAGTACTGGATGCTTTAACTGATGATCCTTGCATGGTGGGAATTGAAGCATGGAAGAGCGCTCGCGATAGCACAGGCTCCACTCCTGAGGATTATGCACGTTTACGAGGCCATTATGCTTACATTCACCTGGTACAGAAGAAAATCAACAAGAGGCAAGGAGGAGCTCATGTTGTTGTTGACATTCCCAGCAATCTGACTGGGTTCAATACAAACCAGAAGCAAAATGAGTTAAGTAGCTTCGACATTGTTAGAAAGGCTGAAGGAAGAAGTGCCCAAAAGCAGTGCAAGCTATGTGATAATAAGTTGTCTTGTAGAGCTGTAGTAGGCAAGTCTCTGGTATATAGACCTGCTATGCTTTCGATGGTGGCCATAGCAGCAGTCTGTGTCTGCGTCGCGCTTCTGTTCAAGAGCTCGCCGGAAGTTCTGTACGTTTTCCGCCCATTCAGGTGGGAATCGTTGGAGTACGGAACAAGCTGA 2865 0.4534 MEARFGSEALQFYAMGGSSVGKRSMEWDLNDWKWDGDLFIARPLNPGPEHRQFFPAGTGIPVSGAPSNSNSSSSCSDEVDLGVRGGNKEGDKKRRVVVLEDDALNEESGTLSLKLGGGSGSGGHGGANIGSWEGGNGKKSRVAGGNSNRAVCQVEDCGADLSNAKDYHRRHKVCEMHSKATKALVGNAMQRFCQQCSRFHMLQEFDEGKRSCRRRLAGHNKRRRKTNNEAVPNASSLNDDQTSSYLLISLLKILSNMHSDRSDQTTDQDLLTHLLRSLASQGGDQGGKNLSNLLAQPENLLKEGSSSGKSENASTLLSNGSQGSPSVIQQHQTVSVAELQHQVMHAHDVMPTDQIMSSTKPSASNSPPTYSEARDSTAGQTKINNFDLNDIYVDSDDGIEDIEKLPVSANLGTSSLEYPWTQQDSHQSSPPQTSGNSDSASAQSPTSSSGEAQSRTDRIVFKLFGKEPNDFPLVLRAQILDWLSHSPTDMESYIRPGCIVLTIYLRQSEAMWEEVSSVLKLIAYVDFWRTGWVHIRVQHQLAFVFNGQVVIDTSLPFRSNNYSKILSISPIAVPASKTAQFSVKGINLNRPATRLLCALEGSYLACEDAHESMDPGSKELEELQCIQFSCSVPVINGRGFIEIEDQAMDFIHEMGWLLHRSQLRSRMVHLNSSVELFPLKRFKWLVEFSVDRDWCAVVKKLLNLLLSGIVCTGDHQSIHLALSEMGLLHKAVRRNSRQLVELLLRYVPVNISDKLGYEDVSLVGGENRSFLFRPDAAGPAGLTPLHIAAGKDGSEEVLDALTDDPCMVGIEAWKSARDSTGSTPEDYARLRGHYAYIHLVQKKINKRQGGAHVVVDIPSNLTGFNTNQKQNELSSFDIVRKAEGRSAQKQCKLCDNKLSCRAVVGKSLVYRPAMLSMVAIAAVCVCVALLFKSSPEVLYVFRPFRWESLEYGTS 954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241725g00016 954 Pfam SBP domain 152 225 IPR004333 GO:0003677
Stsc241725g00016 954 MobiDBLite consensus disorder prediction 302 330 - -
Stsc241725g00016 954 SUPERFAMILY Ankyrin repeat 703 838 IPR036770 -
Stsc241725g00016 954 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 90 841 IPR044817 GO:0003677
Stsc241725g00016 954 MobiDBLite consensus disorder prediction 62 78 - -
Stsc241725g00016 954 FunFam Squamosa promoter-binding-like protein 14 143 213 - -
Stsc241725g00016 954 MobiDBLite consensus disorder prediction 59 90 - -
Stsc241725g00016 954 MobiDBLite consensus disorder prediction 354 378 - -
Stsc241725g00016 954 MobiDBLite consensus disorder prediction 110 143 - -
Stsc241725g00016 954 Gene3D - 143 213 IPR036893 GO:0003677|GO:0005634
Stsc241725g00016 954 SUPERFAMILY SBT domain 150 230 IPR036893 GO:0003677|GO:0005634
Stsc241725g00016 954 ProSiteProfiles Zinc finger SBP-type profile. 149 226 IPR004333 GO:0003677
Stsc241725g00016 954 Gene3D - 696 849 IPR036770 -
Stsc241725g00016 954 MobiDBLite consensus disorder prediction 217 237 - -
Stsc241725g00016 954 MobiDBLite consensus disorder prediction 421 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241725g00016 Stsc-Chr241725 79052 84835 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241725g00016 1 954 SBP-box Gene Family AT3G60030 52.860 0.0 908
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Stsc241725g00016 SBP 8.2e-30 No_clan