Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241725g00013 ATGGAGGATTGTTGTGCCGTTTGCGCCGAGCCTTTGGAATGGGTTGCCTATGGACCTTGTATGCACCGCGATGTCTGCTCCACGTGCGTCTCTCGCCTCCGATTCATATGCCACGATCGTCGTTGCTGCATCTGCAAGACCGAATGCGGCAACGTTTTCGTCACCAAGGCTCTAGGAGACTATACACGGATGATTAATGATTTTTCATCCTTGCCCTCTGACCCAAGAGAGGGCAAGGTTGGATCATATTGGTACCATGAGGATACAAATGCATATTTCGATGATATGGACCATTACAAGATGATCAAGGCTATGTGCAGGCTTTCATGCAGTGTATGTGACAAGATGGATGAGCCACCGCATGATGCCTCAAAGCGCCGGCAGAGGTTTAGGAATATAGAGCAGCTGAAGGGTCACTTATTCCATCGTCATAAGTTGCTTATGTGTAGCTTATGTTTGGAGGGAAGGAAGGTATTTATATGCGAGCAAAAGCTTTATACCAGAGCACAATTGAATCAGCATATAAGCACAGGTGATTCAGAAGTGGATGGAAGTGAGAGTGAGAGAGGTGGTTTTATGGGGCATCCTATGTGTGAGTTCTGTAGAACCCCATTTTATGGGGACAATGAACTATATATGCATATGTCCACAGAACATTATACTTGTCATATATGCCAAAGGCAGCATCCAGGACAGTATGAATACTATAAGAATTATGATGACCTTGAGATCCATTTCCGTAATGAGCATTTCTTGTGTGAAGATGAAGCTTGCCTTGCTAAGAAGTTTATTGTGTTCCAATCTGAATCAGAAATGAAGAGGCATAATGCTATTGAACATGGAGGGCGTATGTCACGGTCACAGCGCAATGCTGCTCTTCAGATACCAACTAGCTTTCGATATAGGCGTAATGATCAAGACCAACGCCGTGGAAGAGGCCGCTCCTTTCGTCGTGATTTTTCTGAAAATCAACTTTCTATGGCCATTGAAGCCAGCTTGCAAATGGCTAATGCAGCGCAAACATTGCATGATCCATCAACTTCAAGTAGTGGATACGCTGTGGTTGATGACGGCAATGCTGATGTTGATTCTATTGTTCAGCCATTTGAATCCTTAGCTACTTCGGGTTCTGAAGCATCTGCACGATACCTCCAAGCCTTAGGACCTAGCTCAAGGAATGCAGCACTAGTAGAGTCATCCTTCCCCCCACTCCCACTAGCTTCCAGCAATGACCAGCAAAGGTCCAAACAGGAGTCAGAAGGTTCATCCAGTAATACCATGGTAGCACGCTTGCGTCGGCATGGGAACAGAAATGTTTCTGTAATTAATTCTGGTAATGCTTGGCCTGCACCAGGTCGTGGACGATTATCAGGTAATTCCTCCCAAGCTAGACTGCAATCAAATGTTGCTCCTGGAGTGCCACACATATCTGGTCAGATGAAGACAGCAAATAGCAGTGGCCCTTCACCCTCAACGTATGCTAGTTCTATTCAGCCTACCTCTAGAACTGCCCATGCACAATCATCTGTTGGTTCTTCGAGGGACACACGTGATAATGGAAGAATGGTTCACTCTGCATCTGCCCCAAATCTCATTGAGAGCAACCCCATTGAAGCTTCGATCTCTGATTTTCCTCCTGTTTCTGCTGCACTAGTGAGCAAGTCATCTGCCAGCACTCAGACTTCGTTGAATGTGGAAAACGTTCAGTCTGCTAACAAGTCATTGGTTGAAAAGATTCGTGGAGCTCTTGATTTTGATGAAGATAGATACACTTTGTTTAAAGACCTATCTGGTCAATATCGTCAAGGCACAATTGATACGGAGACGTATCTGGACTATGTGCAGCAGTTTGGTTTGTCTCATCTTGTACCCGAAATGGCTAATTTATTGCCAGATGCTCAGAAGAAGGAAGAGCTCATTGCGTCCTACAATCGCACTTTGCAAAGGAAAGCTTTGCCAGAAAATGGATGGGCCCGGGGTAGTTCTGGCATCCCCGCTAAAGATAGTAATGCTTCCAAAAAAGGTAAAGGTAAGTCTGTTGATGGTAGCGGTAACTCTACAAATAGATTAGCAGATAGTTTCTTAAGCACAGTACATCAACTACAGTCAAGCTATAAATCTTCAGAAGAGAATTTAGAGGTGCTATCAAGGGGTGATTATCGCACCAGCAAGGGCAAGTCAAAAATCAGTCAGCAGATAGATACCAATTCGGGTAATCAACCTTTGAGAATCAGTGGGCAGACAGAGGCATCGGGTGGAGGTTTATCAAATCAGAAAAAGGAGGATGCTGGTGCTGGCAGCAAACAACGGAAAAAATCTTCCAAATTTCTGAGAGTACGACTTGGCGATGGTTCTGCTTCAGCCCTTCTTGATTTTGATAGCTCACACACTGAACCAGATCCTGGAACAACAGACACTTTGCCTGGTAACAAGAATGACAATGGAGGACCACCTGTGCGAGGTGTTTGGCGAAAGGGGGGAGGCCAGAGACTCTTCAACTGA 2502 0.452 MEDCCAVCAEPLEWVAYGPCMHRDVCSTCVSRLRFICHDRRCCICKTECGNVFVTKALGDYTRMINDFSSLPSDPREGKVGSYWYHEDTNAYFDDMDHYKMIKAMCRLSCSVCDKMDEPPHDASKRRQRFRNIEQLKGHLFHRHKLLMCSLCLEGRKVFICEQKLYTRAQLNQHISTGDSEVDGSESERGGFMGHPMCEFCRTPFYGDNELYMHMSTEHYTCHICQRQHPGQYEYYKNYDDLEIHFRNEHFLCEDEACLAKKFIVFQSESEMKRHNAIEHGGRMSRSQRNAALQIPTSFRYRRNDQDQRRGRGRSFRRDFSENQLSMAIEASLQMANAAQTLHDPSTSSSGYAVVDDGNADVDSIVQPFESLATSGSEASARYLQALGPSSRNAALVESSFPPLPLASSNDQQRSKQESEGSSSNTMVARLRRHGNRNVSVINSGNAWPAPGRGRLSGNSSQARLQSNVAPGVPHISGQMKTANSSGPSPSTYASSIQPTSRTAHAQSSVGSSRDTRDNGRMVHSASAPNLIESNPIEASISDFPPVSAALVSKSSASTQTSLNVENVQSANKSLVEKIRGALDFDEDRYTLFKDLSGQYRQGTIDTETYLDYVQQFGLSHLVPEMANLLPDAQKKEELIASYNRTLQRKALPENGWARGSSGIPAKDSNASKKGKGKSVDGSGNSTNRLADSFLSTVHQLQSSYKSSEENLEVLSRGDYRTSKGKSKISQQIDTNSGNQPLRISGQTEASGGGLSNQKKEDAGAGSKQRKKSSKFLRVRLGDGSASALLDFDSSHTEPDPGTTDTLPGNKNDNGGPPVRGVWRKGGGQRLFN 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241725g00013 833 MobiDBLite consensus disorder prediction 654 686 - -
Stsc241725g00013 833 MobiDBLite consensus disorder prediction 725 755 - -
Stsc241725g00013 833 CDD RING-HC_ZNF598 3 54 IPR041888 -
Stsc241725g00013 833 MobiDBLite consensus disorder prediction 797 811 - -
Stsc241725g00013 833 MobiDBLite consensus disorder prediction 705 833 - -
Stsc241725g00013 833 MobiDBLite consensus disorder prediction 478 516 - -
Stsc241725g00013 833 MobiDBLite consensus disorder prediction 401 522 - -
Stsc241725g00013 833 ProSiteProfiles Zinc finger RING-type profile. 5 46 IPR001841 -
Stsc241725g00013 833 PANTHER ZINC FINGER PROTEIN 598 1 740 IPR044288 GO:0061630|GO:0072344
Stsc241725g00013 833 SMART c2h2final6 108 144 IPR013087 -
Stsc241725g00013 833 SMART c2h2final6 196 219 IPR013087 -
Stsc241725g00013 833 SMART c2h2final6 220 250 IPR013087 -
Stsc241725g00013 833 SMART c2h2final6 251 280 IPR013087 -
Stsc241725g00013 833 MobiDBLite consensus disorder prediction 401 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241725g00013 Stsc-Chr241725 58207 62504 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241725g00013 1 828 C2H2 Transcription Factor Family AT3G62240 53.059 0.0 823
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241725g00013 K22381 - gmx:100799878 1251.88