Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241724g00001 ATGGGCACTGAAAAGGTTGGAAGTTGTGGGAAATTCCTAGAGAGCTCAAAACCCTATTTTGCAATGATCTCTTTACAATTTGGATATGCTGGCATGAATGTTATTACTAAGCTTTCTCTTAATCAAGGCATGAGCCACTATGTTCTTGTTGTTTATCGCCATGCCTTTGCAGCCGCTAGCATTGCTCCATTTGCCTTTATGTTTGAAAGGAAAGGTCAACCAAAGATAACACTCAAAGTTTTCATGCAACTTTTCATTCTAGCTCTGCTTGGCCCAGTGATTGATCAAAATTTTTACTATGCTGGATTGAAGCTTACATCTCCAACATTTTCATGTGCAATGAGCAACATGCTTCCGGCCATGACTTTTGTTATGGCAGTTATATGCCGGATGGAAAAGATAGACATGAAGAAAGTGAGATGCCAAGCGAAGGTAGTGGGAACATTAGTGACAGTTGCTGGGGCCATGTTGATGACATTATACAAAGGTCCTATTATGGAATTGGTGTGGGCTAAACATAGAGAAATTAATCACAACACCACCAATTCTTCGTCATCAACAACAATCAACAATGGATCCTCTGAAAAAGATTGGTTCTTAGGATGCACTTTCCTCATCATTGCTACACTTGCCTGGGCTTCCCTCTTTGTTCTACAAGCAAAAGCTATAGAAACGTACAAGAATCATCAACTAAGCCTGACAACAATTATATGCTTCATAGGAACTCTTCAAGCAACTGCAGTTACTTTTGTTATGGAACACAATCCTTCTGTTTGGAGAATTGGTTGGGACATGAACCTTCTTGCTGCTGCCTATGCTGGAATTGTGACATCAAGTATATCATACTATGTACAAGGGTTGGTAATTAAGAAGAAGGGACCTGTCTTTGCAACTGCTTTTAGCCCTCTTATGATGATCATTGTTGCCATCATGGGCTCCTTCATCCTTGCTGAGCAGATTTATCTTGGAGGTGTGGTTGGATCCATCTTGATTGTCATAGGCTTATACTCTGTTCTATGGGGAAAGCACAAAGAACAAATAGAGACCAAAATAATGGGACATCATGATGACAATGATATGCAACATTTGCCTGTTACAAAAGCTAATAATAATAATGGTGCTCATAATTTTGGAAATGAAGACTCAAAAAATGATGCCACATTAGTAGATCATCATTGCACTCAAGAAAATTTTGGTCATCACAAAGAAGAAGTCAACGACAAGGAGAAGCACTGCTCTTCAGTTGTAATAGCCATGACTAACCAAGAGGCAAATTAA 1278 0.3928 MGTEKVGSCGKFLESSKPYFAMISLQFGYAGMNVITKLSLNQGMSHYVLVVYRHAFAAASIAPFAFMFERKGQPKITLKVFMQLFILALLGPVIDQNFYYAGLKLTSPTFSCAMSNMLPAMTFVMAVICRMEKIDMKKVRCQAKVVGTLVTVAGAMLMTLYKGPIMELVWAKHREINHNTTNSSSSTTINNGSSEKDWFLGCTFLIIATLAWASLFVLQAKAIETYKNHQLSLTTIICFIGTLQATAVTFVMEHNPSVWRIGWDMNLLAAAYAGIVTSSISYYVQGLVIKKKGPVFATAFSPLMMIIVAIMGSFILAEQIYLGGVVGSILIVIGLYSVLWGKHKEQIETKIMGHHDDNDMQHLPVTKANNNNGAHNFGNEDSKNDATLVDHHCTQENFGHHKEEVNDKEKHCSSVVIAMTNQEAN 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241724g00001 425 PANTHER WAT1-RELATED PROTEIN 17 354 IPR030184 GO:0016020|GO:0022857
Stsc241724g00001 425 Pfam EamA-like transporter family 18 159 IPR000620 GO:0016020
Stsc241724g00001 425 Pfam EamA-like transporter family 200 339 IPR000620 GO:0016020
Stsc241724g00001 425 SUPERFAMILY Multidrug resistance efflux transporter EmrE 52 162 - -
Stsc241724g00001 425 SUPERFAMILY Multidrug resistance efflux transporter EmrE 260 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241724g00001 Stsc-Chr241724 2585 7035 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241724g00001 1 407 Nodulin-like Gene Family AT5G07050 65.526 0.0 537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241724g00001 - - gmx:100804390 583.563