Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241723g00022 ATGGATAGACATGAGGATGAGCAACACTCTAATCCCTTCGCCACCATCGATTCCGATTCCGACTCGGTGAGTTGTTTCGTCACCGATCTCTTTGAAACTCGCTCCGACCGTTCTCGTCATTGCTCGTGCGGCGACGTCAATATAAATCCCTTCTCCGGCGTCGTTTGCGACCTTCACGGTGAAGCATCGTTAGGGTTAGGGTTTGGAGCTGAAATTGGATCCCAAAGCGACGAACACAGTGCTGTTTTCGATTTCTCGATAGGTGATGATAATGGTTTGGGTGGGCTTAGCGTTGTTGGATTCGGATCCGATTCGGATTCGGGTGGAGAGGAAGGTGAGATTGATCGCGCTATGGAGGATTTCGGTTCTTCTGGTGTGCGTGGTTTTAGTGATGATGATGATCATAGGGTTGAGGGTAGTGGGTTTGATGATTTTGATGTTAGGTTGTGTTGGGATAGCCTCTGTTTGGAGGATCAGAGGACCTTGAATGAGGGTTTTGAATGGGAGGAGGTGGAGGAGAGGGTGAATGATAGGGAAGATTTGAGTTTGGCCATTGATGAGGTTGAGGTTGATGATCAATCAGTGGCGTCGGGGTTTTCGCACAGCGAGGATCCCGGCGAGGAGGCGTTGAGGTACCTGGAGTGGGAGATTCTCTTGGCTGTGAACAATTTGGATAGGAATTCAATCTTGGAACATGAAGCCAATTTGGATTCTTATTTGGCAGTTGGGGATGGTTATATGTACACTGCTGAGTATGATGTTCTGTTTGGGCAGTTTCTGGAGAATGACAATGCCTTGAAGGGTAGCCCGCCGGCAGCGAAGAGTGTTGTTGAGAATCTTCCTGTGGTTGAGTTGACAAAGGAGGAGTTGCAGGGGAAGAATGTGGCGTGTGCGATTTGTAAAGATGAGATATTGTTGGAGGAGAAGGTGACTAGGCTTCCTTGCTCACACTGTTATCATGGGGACTGCATTATGCCTTGGTTGAGTATTCGCAACACGTGCCCTGTCTGTCGATTTGAGTTGCCTACCGATGATCCTGAATACGAGCAGAGGAAGAGCCGCAGGGCTGCTCACGAGATGTTGGACCTTGCATTGCAGAGGCAAGTTTGA 1110 0.4901 MDRHEDEQHSNPFATIDSDSDSVSCFVTDLFETRSDRSRHCSCGDVNINPFSGVVCDLHGEASLGLGFGAEIGSQSDEHSAVFDFSIGDDNGLGGLSVVGFGSDSDSGGEEGEIDRAMEDFGSSGVRGFSDDDDHRVEGSGFDDFDVRLCWDSLCLEDQRTLNEGFEWEEVEERVNDREDLSLAIDEVEVDDQSVASGFSHSEDPGEEALRYLEWEILLAVNNLDRNSILEHEANLDSYLAVGDGYMYTAEYDVLFGQFLENDNALKGSPPAAKSVVENLPVVELTKEELQGKNVACAICKDEILLEEKVTRLPCSHCYHGDCIMPWLSIRNTCPVCRFELPTDDPEYEQRKSRRAAHEMLDLALQRQV 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241723g00022 369 SUPERFAMILY RING/U-box 285 344 - -
Stsc241723g00022 369 ProSiteProfiles Zinc finger RING-type profile. 297 338 IPR001841 -
Stsc241723g00022 369 Pfam Ring finger domain 297 338 IPR001841 -
Stsc241723g00022 369 SMART ring_2 297 337 IPR001841 -
Stsc241723g00022 369 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 258 344 IPR013083 -
Stsc241723g00022 369 FunFam E3 ubiquitin-protein ligase RING1-like 258 344 - -
Stsc241723g00022 369 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 194 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241723g00022 Stsc-Chr241723 104128 105237 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241723g00022 90 369 C3H Transcription Factor Family AT3G02340 42.140 2.92e-49 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241723g00022 - - gmx:100812037 427.172