Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241723g00010 ATGGGAAGAAGACAACAGATCTCGATCTACGATATCGTCGTCGGCGACGTTGTTTGCTTGAAGATCGGCGATCAGGTTCCGGCGGACGGGCTATTCGTCGACGGACACTCGCTGCGGATCGACGAATCGAGCATGACTGGGGAGAGCGATCATGTTGAGGTTAGCAGCGTCAACAATAATCCGTTCTTGTTCTCAGGAACGAAGGTAGTTGACGGTTACGCAAAGATGGTGGTTACTTCCGTTGGAATGAAGACTACTTGGGGAGAGATGATGAGTTCGATTAGCCGCGACGTTAACGAGGAAACTCCGTTGCAAGCTCGGCTTAACAAACTCACTTCCGCGATCGGGAAGGTTGGTTTGGCAGTTGCTTTTCTTGTTCTTGTTGTTCTGCTTGTTCGTTACTTCACCGGGAACACGAATAACGAGAATGGAATAAAAGAGTTTAACGGGAGGAAGAGTAAGTTCAGTGATGTGATGAATGCTGTGGTTGGAATTGTGGCGGATGCGGTTACGATTGTGGTTGTTGCGATCCCGGAAGGGCTGCCGTTGGCGGTTACGTTGACTTTGGCTTATTCGATGAAGAAAATGATGGCGGATCATGCTATGGTGAGAAAGCTCTCAGCGTGTGAGACGATGGGATCTGCTACCACTATTTGCACGGATAAAACAGGAACACTCACACTCAATGAAATGAAGGTGACGAAGTTCTGGATGGGGTTAGAGCCTGTGTTGGAGAATGCGTATTCATCTGTTGCGCCTTTTGTTCTTGGATTGATCCAAGAAGGTGTGGCTTTGAACACTACCGGTAGCGTTCACAAGTCGAAATCCGAATCCGAATCCGGTTCGGATTTCGAGTTTTCCGGTAGTCCTACCGAGAAAGCAATACTCTCATGGGCGGTTTTGGAGATGGATATGAAGATGGATGAATTGAGAAAAGGATACAACATTATTCAGGTTGAGACCTTCAATTCAAAGAAGAAAAGGAGCGGGGTTTTGTTGAGGAGGAAAGCGGATAACACTGTCAATGTTCACTGGAAAGGTGCTGCTGAAATGGTGCTAAAAATGTGTTCAAAGTATTATGATGCTTCTGGAATTGTGAAAGATCTTGACGGAGAAAGTATGATGAAATTTGAGAACATCATTCAAGGAATGGCAGCTAGTAGTCTTCGCTGCATCGCTTTTGCACAAACGGAAGTTTCAGAGGAAGAGGTTGAAGATGGAGAGGGTAAAGCTACGGTGAAAGAAAATGATTTAACTCTAATAGGATTAGTCGGAATCAAGGATCCGTGCCGGCCGGGGGTGAAGGCGGCGGTGGAGTCTTGCCAGAATGCCGGAGTTAATGTCAAAATGATTACAGGGGACAATGTTTTCACTGCAAAAGCAATAGCAACAGAATGCGGCATACTCCGGCAAGATCAAGACATGGCTGGCGCGGTGGTGGAAGGGGAGGAGTTTCGCAACTACACGCCGGAGGAAAGACTGGAGAAGGTGGAGAAGATCTGCGTGATGGCGAGATCTTCTCCGTTCGACAAGCTTCTGATGGTAGAGTGCCTTAAACAGAAAGGACACGTGGTTGCCGTGACAGGGGACGGAACAAACGATGCGCCGGCGCTTAAGGAAGCTGATATTGGACTCTCCATGGGGATTCAGGGCACGGAGGTGGCGAAAGAGAGCTCTGATATTGTCATATTAGACGACAATTTCGCCTCTGTGGTAACGGTGTTGAAGTGGGGAAGGTGTGTTTACAACAACATTCAGAAGTTCATACAGTTTCAATTGACAGTGAATGTTGCTGCACTTGCAATTAACTTCGTGGCGGCGGTGTCGGCCGGCGAAGTTCCCCTCACGGCTGTGCAACTCTTGTGGGTGAATTTGATCATGGACACGTTGGGAGCATTGGCACTTGCAACTGAAAAACCTACCATGGAGTTAATGGAGAAACCGCCGGTTGGAAGAACAAAGCCTCTGATAACAAACGTGATGTGGAGGAACCTTGTGGCTCAAGCTTTGTACCAGATTGCGGTTTTGTTGACTCTTCAGTTCAGAGGTGAGTCTATCTTTGGTGTTAGTAAAGGGGTTAATGACACTTTGATTTTCAACACTTTTGTTATGTGCCAAGTGTTCAATGAGTTCAATGCAAGGAAATTGGAGAAGAGGAATGTTTTTAAGGGGTTGCATAGGAGCAAGTTGTTCTTGGGGATTATTGGTGTGACAGTGGTACTCCAAGTTGTGATGGTTGAGTTTTTGAAGAAGTTTGCTGACACTGAGAGGCTGAATTGGGGGCAATGGGGTGTTTGCATTCTTCTAGGTGCTGCTTCTTGGCCAATTGGTTGGCTTGTCAAGTTGATTCCAGTCCCAGAAAAGCCTTTTCTTGATTTCCTTAGTATCAAGAAGTGA 2397 0.4685 MGRRQQISIYDIVVGDVVCLKIGDQVPADGLFVDGHSLRIDESSMTGESDHVEVSSVNNNPFLFSGTKVVDGYAKMVVTSVGMKTTWGEMMSSISRDVNEETPLQARLNKLTSAIGKVGLAVAFLVLVVLLVRYFTGNTNNENGIKEFNGRKSKFSDVMNAVVGIVADAVTIVVVAIPEGLPLAVTLTLAYSMKKMMADHAMVRKLSACETMGSATTICTDKTGTLTLNEMKVTKFWMGLEPVLENAYSSVAPFVLGLIQEGVALNTTGSVHKSKSESESGSDFEFSGSPTEKAILSWAVLEMDMKMDELRKGYNIIQVETFNSKKKRSGVLLRRKADNTVNVHWKGAAEMVLKMCSKYYDASGIVKDLDGESMMKFENIIQGMAASSLRCIAFAQTEVSEEEVEDGEGKATVKENDLTLIGLVGIKDPCRPGVKAAVESCQNAGVNVKMITGDNVFTAKAIATECGILRQDQDMAGAVVEGEEFRNYTPEERLEKVEKICVMARSSPFDKLLMVECLKQKGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKESSDIVILDDNFASVVTVLKWGRCVYNNIQKFIQFQLTVNVAALAINFVAAVSAGEVPLTAVQLLWVNLIMDTLGALALATEKPTMELMEKPPVGRTKPLITNVMWRNLVAQALYQIAVLLTLQFRGESIFGVSKGVNDTLIFNTFVMCQVFNEFNARKLEKRNVFKGLHRSKLFLGIIGVTVVLQVVMVEFLKKFADTERLNWGQWGVCILLGAASWPIGWLVKLIPVPEKPFLDFLSIKK 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241723g00010 798 FunFam Calcium-transporting ATPase 229 429 - -
Stsc241723g00010 798 Gene3D - 96 781 - -
Stsc241723g00010 798 Pfam E1-E2 ATPase 2 197 - -
Stsc241723g00010 798 FunFam Calcium-transporting ATPase 545 787 - -
Stsc241723g00010 798 NCBIfam calcium-translocating P-type ATPase, PMCA-type 2 785 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Stsc241723g00010 798 PANTHER CATION TRANSPORTING ATPASE 2 785 - -
Stsc241723g00010 798 FunFam Calcium-transporting ATPase 423 573 - -
Stsc241723g00010 798 SUPERFAMILY Calcium ATPase, transduction domain A 2 93 IPR008250 -
Stsc241723g00010 798 PRINTS H+-transporting ATPase (proton pump) signature 560 585 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc241723g00010 798 PRINTS H+-transporting ATPase (proton pump) signature 528 544 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc241723g00010 798 PRINTS H+-transporting ATPase (proton pump) signature 377 395 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc241723g00010 798 Gene3D - 5 95 - -
Stsc241723g00010 798 PRINTS P-type cation-transporting ATPase superfamily signature 528 547 - -
Stsc241723g00010 798 PRINTS P-type cation-transporting ATPase superfamily signature 444 454 - -
Stsc241723g00010 798 PRINTS P-type cation-transporting ATPase superfamily signature 422 433 - -
Stsc241723g00010 798 PRINTS P-type cation-transporting ATPase superfamily signature 552 564 - -
Stsc241723g00010 798 PRINTS P-type cation-transporting ATPase superfamily signature 41 55 - -
Stsc241723g00010 798 PRINTS P-type cation-transporting ATPase superfamily signature 219 233 - -
Stsc241723g00010 798 ProSitePatterns E1-E2 ATPases phosphorylation site. 221 227 IPR018303 -
Stsc241723g00010 798 Pfam haloacid dehalogenase-like hydrolase 216 542 - -
Stsc241723g00010 798 SFLD Haloacid Dehalogenase 201 581 - -
Stsc241723g00010 798 SUPERFAMILY HAD-like 217 633 IPR036412 -
Stsc241723g00010 798 Gene3D - 216 573 IPR023214 -
Stsc241723g00010 798 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 225 434 IPR023299 GO:0000166
Stsc241723g00010 798 NCBIfam HAD-IC family P-type ATPase 501 609 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc241723g00010 798 NCBIfam HAD-IC family P-type ATPase 162 241 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc241723g00010 798 SFLD p-type atpase 201 581 IPR044492 -
Stsc241723g00010 798 SUPERFAMILY Calcium ATPase, transmembrane domain M 95 785 IPR023298 -
Stsc241723g00010 798 Gene3D - 229 429 IPR023299 GO:0000166
Stsc241723g00010 798 Pfam Cation transporting ATPase, C-terminus 613 783 IPR006068 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241723g00010 Stsc-Chr241723 51696 54309 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241723g00010 2 798 Primary Pumps ATPases AT3G22910 72.875 0.0 1134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241723g00010 K01537 - gmx:100793918 1325.07