Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241723g00006 ATGTTGAGGGAAGGAACAAACATCAATATTGGCGGGAGTTGCAGTTCCAGCAACAACTGGTCACGTGTTTGCGACACGTGCCGCTCCGCGCCTTGCGTGGTGTACTGCCGCGCGGACTCTGCCTACCTGTGCTCGGCATGCGACGGCAGAGTCCACGCGGCAAACAGGGTGGCGTCGAGGCACGAGCGCGTGTGGGTGTGCGAGGCCTGCGAGCGTGCCCCGGCCGCCTTCCTTTGCAGGGCAGACGCCGCATCCCTCTGCTCCTCCTGCGACTCCGACATCCACTCCGCCAACCCCCTCGCCAGCCGCCACCACCGTGTTCCCATTCTCCCTATCTCGGGTTGTTCCTCGCTCATCCGACCAGGAGGAGAAGAAGAACAACTAGAAAGAGAGAAAGATCACGTGGTTGAAGGTACAATTAACAATCAGAATTACAACGATGGGTGTGAAATGGAGGATGAGGAGTGTGAGGGTGATGACGAGGCTGAAGCTGCTTCATGGTTGTTGCCGCATCCTGTGAAGATGGGTGGTAACGATGAGAGTGATGGGTTCTTGTTTTGTGGTGGAGATGGTGATTGTAATGGTGATGAGTACTTGGAGCTTGTGGATTGTGACAATAATAAACAGTTTAGTTGTGTTGATCATCATGAGCAAGATATGCAGCAACATAACTATGGCGGTGGGAGTGGTAATGTTATGGATTATAATCAGGGAAACAATCATGACAGTGTAGTTCCTGTTCAGATGCAACAGTGTTTCGAGTTTGAGTCTTCTAAAGTTGGTGGATTCAGTTACAATGGATCTCTTAGTCAAAGCGTTTCAATTTCATCTATGGAAGTTGGAGTAGTACCAGAATCAACATTCAGCGATGTGTCAATCTCACATTCAAAGGCACAAAGAGTATCAAGTGAGCAGCAATTTCCTCCAATGCCTATGCCTTCAACACTTCTATCTCCAATGGACAGAGTAGCCAGAGTTCTAAGATACAGAGAAAAAAAGAAAACAAGAAAGTTTGAGAAGAAAATAAGGTATGAATCAAGAAAGGCCTATGCCGAAACCAGGCCACGTATTAAGGGTCGTTTTGCAAAGAGAACAGACGTAGAAGCTGATGAAGTTGATCAAATGTTATCATCAACCCTAATGTCAGAAGCTGTATATGGCATTGTTCCATTCTTCTGA 1179 0.4801 MLREGTNINIGGSCSSSNNWSRVCDTCRSAPCVVYCRADSAYLCSACDGRVHAANRVASRHERVWVCEACERAPAAFLCRADAASLCSSCDSDIHSANPLASRHHRVPILPISGCSSLIRPGGEEEQLEREKDHVVEGTINNQNYNDGCEMEDEECEGDDEAEAASWLLPHPVKMGGNDESDGFLFCGGDGDCNGDEYLELVDCDNNKQFSCVDHHEQDMQQHNYGGGSGNVMDYNQGNNHDSVVPVQMQQCFEFESSKVGGFSYNGSLSQSVSISSMEVGVVPESTFSDVSISHSKAQRVSSEQQFPPMPMPSTLLSPMDRVARVLRYREKKKTRKFEKKIRYESRKAYAETRPRIKGRFAKRTDVEADEVDQMLSSTLMSEAVYGIVPFF 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241723g00006 392 SMART bboxneu5 67 109 IPR000315 GO:0008270
Stsc241723g00006 392 SMART bboxneu5 19 66 IPR000315 GO:0008270
Stsc241723g00006 392 Pfam CCT motif 322 364 IPR010402 GO:0005515
Stsc241723g00006 392 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 24 382 IPR045281 GO:0009909
Stsc241723g00006 392 CDD Bbox1_BBX-like 23 66 - -
Stsc241723g00006 392 ProSiteProfiles CCT domain profile. 322 364 IPR010402 GO:0005515
Stsc241723g00006 392 ProSiteProfiles Zinc finger B-box type profile. 19 66 IPR000315 GO:0008270
Stsc241723g00006 392 ProSiteProfiles Zinc finger B-box type profile. 62 109 IPR000315 GO:0008270
Stsc241723g00006 392 CDD Bbox1_BBX-like 66 109 - -
Stsc241723g00006 392 Pfam B-box zinc finger 64 109 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241723g00006 Stsc-Chr241723 34066 35787 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241723g00006 1 392 C2C2-CO-like Transcription Factor Family AT3G02380 47.073 3.22e-108 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Stsc241723g00006 zf-B_box 3.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241723g00006 - K12135 adu:107471551 627.861