Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241723g00005 ATGCTTCAAACACTTGATCTCTCTAATAACTTCTTCAATGGGGAAATTCCTCAATCCCTTGCTCATCTCAGAACACTTCAGTACTTGAGGCTTAATAATAACAGTTTTTCTGGGGAATGTCCTATGTCAGTGGCTAACATGGCTCAGCTTTCTTTTCTTGACTTGTCCTACAATAATCTGAGTGGACCTGTACCAAGAATTTTGGCCAAATCATTCAGTATTGTTGGAAACCCCCTTGTATGTGCAACCGGAAAAGAAACAAACTGCCATGGAATGACACTGATGCCTATGTCCATGGACTTGAACACTACTCAGAGTGCTTCACCATCAAGCAGACATAAAACTCACAAAATAGCCATCGCATTCGGTTTAAGTCTTGGATGCCTCTCCTTTATAGTTCTTGTCTTTGTACTTTTTATATGGTGGAGGCATAAGGCCAATAAGCAGGCATTCTTTGATGTCAAAGAGAGGCACCATGAAGAAGTGTACCTTGGAAACCTAAAGAGGTTCCAATTAAGAGAACTGCAGAATGCTACAAACAATTTCAGCAACAAGAACATACTTGGAAAGGGTGGTTTTGGGAATGTGTACAAAGGAACTCTTCAAGATGGGACAGTTGTAGCTGTGAAGAGGCTCAAAGATGGGAATGCCATTGGAGGGGAGATTCAGTTTCAGACTGAAGTTGAAATGATCAGCTTGGCAGTGCACAGAAACCTCCTTAAACTATATGGATTCTGTGTTACACCAACAGAAAGGCTTTTGGTTTATCCCTACATGTGCAATGGCAGTGTTGCTTCACGTCTCAAAGGTAAGCCAGTCCTAGAGTGGAGCACAAGGAAGCAGATTGCATTAGGAGCAGGAAGAGGATTAATGTACCTCCATGAGCAGTGTGATCCAAAGATAATACACAGGGATGTAAAAGCTGCAAACATATTACTTGATGAGTATTGTGAAGCAGTGGTTGGTGATTTTGGGTTGGCAAAGCTTTTAGATCATCAAGACACGCACGTGACAACTGCCGTGAGAGGTACTGTGGGCCACATTGCACCAGAATATCTCTCCACAGGGCAGTCCTCTGAGAAAACTGATGTCTTTGGATTTGGTATTCTACTTCTTGAATTGATAACCGGCCTGAGGGCTTTGGAGTTTGGTAAGGCTGCGAACCAGAAAGGTGCTATGCTTGATTGGGTAAGTAAAATTCACAAGGAGAAGAAGCTTGAATTACTTGTAGACAAGGATCTAAAGAACAACTATGACAGGATTGAGCTTGAAGAAATTGTGAAGGTGGCTCTTTTGTGCACACAATATCTTCCGGGCCACAGGCCCAAGATGTCTGAGGTTGTTCGTATGCTTGAAGGTGATGGGCTTGCTGAGAAATGGGAGGCTTCACTAACAGCCCATGATACAACAAAGGGAAAAGCCCATGAGTTTTCTAATTCAGATCGATATTCTGATCTCACTGATGATTCTTCTTTGTTAGCCCAGGCCATGGAGCTCTCAGGCCCAAGATGA 1512 0.4292 MLQTLDLSNNFFNGEIPQSLAHLRTLQYLRLNNNSFSGECPMSVANMAQLSFLDLSYNNLSGPVPRILAKSFSIVGNPLVCATGKETNCHGMTLMPMSMDLNTTQSASPSSRHKTHKIAIAFGLSLGCLSFIVLVFVLFIWWRHKANKQAFFDVKERHHEEVYLGNLKRFQLRELQNATNNFSNKNILGKGGFGNVYKGTLQDGTVVAVKRLKDGNAIGGEIQFQTEVEMISLAVHRNLLKLYGFCVTPTERLLVYPYMCNGSVASRLKGKPVLEWSTRKQIALGAGRGLMYLHEQCDPKIIHRDVKAANILLDEYCEAVVGDFGLAKLLDHQDTHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGLRALEFGKAANQKGAMLDWVSKIHKEKKLELLVDKDLKNNYDRIELEEIVKVALLCTQYLPGHRPKMSEVVRMLEGDGLAEKWEASLTAHDTTKGKAHEFSNSDRYSDLTDDSSLLAQAMELSGPR 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241723g00005 503 Gene3D Phosphorylase Kinase; domain 1 151 258 - -
Stsc241723g00005 503 SMART serkin_6 182 437 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241723g00005 503 FunFam Leucine-rich repeat receptor protein kinase EMS1 1 78 - -
Stsc241723g00005 503 Pfam Leucine rich repeat 2 60 IPR001611 GO:0005515
Stsc241723g00005 503 Gene3D Ribonuclease Inhibitor 1 91 IPR032675 -
Stsc241723g00005 503 SUPERFAMILY Protein kinase-like (PK-like) 160 452 IPR011009 -
Stsc241723g00005 503 Gene3D Transferase(Phosphotransferase) domain 1 259 470 - -
Stsc241723g00005 503 ProSiteProfiles Protein kinase domain profile. 182 437 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241723g00005 503 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 2 462 - -
Stsc241723g00005 503 Pfam Protein kinase domain 183 448 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241723g00005 503 ProSitePatterns Serine/Threonine protein kinases active-site signature. 301 313 IPR008271 GO:0004672|GO:0006468
Stsc241723g00005 503 SUPERFAMILY L domain-like 2 74 - -
Stsc241723g00005 503 FunFam Somatic embryogenesis receptor-like kinase 1 259 471 - -
Stsc241723g00005 503 ProSitePatterns Protein kinases ATP-binding region signature. 188 210 IPR017441 GO:0005524
Stsc241723g00005 503 FunFam Somatic embryogenesis receptor kinase 1 151 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241723g00005 Stsc-Chr241723 24407 28439 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241723g00005 2 503 Receptor kinase-like Gene Family AT5G16000 75.787 0.0 793
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Stsc241723g00005 Pkinase 3.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241723g00005 - - gmx:100806650 865.914