Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241723g00002 ATGGCGGTTGACGTCGTCAAGTGTAATGCAATCAGAAAACGCAAAAGAGCATCGATGAAACGAAAACTTCTTGTTAACGACAGAGTTGAGGTGAGGAGTGTGGAAGATGGGTTTATGGGGTCATGGCACCCGGGTACAGTTATACATTCTGGCAAACAAAAGCGTCACGTGAGGTATGACAATGTGTTGGAAGATGATGGATCAAACTACGTTGTTGATGTGGTTGCTGTTTCGCCGGTTGTGGATGGTGTTGGTGTTTCATATTCTAAAGTTGAGCGTGGCTACATTAGGCCAGTGCCTCCATTGTTTGAATTTGGTGGATGGGACCTCCCATTTGGACTCTGCGTCGACGTTAGTTACCAAGAAGCATGGTGGGAAGGCGTTGTTTTTGATCACTCCAATGGAATGGATGAGAGAAGAGTCTTTTTCCCTGACTTGGGTGATGAGATGAAAATTGGGATCCATCATTTGAGGATAACTCATGATTGGGATGAATTTGCAGACGATTGGAGGCCAAGGGGGAAGTGGGTTTTTCTTGAATTGATTGAGGAGTGTGAGAAGTTGTCTTATGTTGCTGTCTCAGTGAAGCAGATTTGGTATGATGTGAGGGTTAGGAAGGAGTTTGATAGCCTTATTAGGGATTGGACTTGTGATGAGAAGAAATTGTGGAGAGATCTTGTTATGGAGGTAGCTGGTGACTACTATGCTCTCACATTGCAAGACCTTTTGCCCGCATTAAACCTTGAAATGGATTTCTCGGAAGAAACACAAAGAATTGAGTTAGTTGAGCCTACTGCTAATGCATTTGGTTCTTGCACAAGAACAACTGATGCCTTGGAGGAGAAAGGCGACTCAGCAGATCTAATGGATTGCGATAAAAACTCCGGTAGCATTGATCACATTCAAAAGGAAAACAATATAGATACTTTGATTGCCGGGGCCTCTAATGAGCAAAATATAGCAGAGTTAAATATGAATGTACCTAAGGAGGAAGATGTGATGTCAAGAGAACCTATATCACCAATTCAGCAAATTTTTCCTAAAGATCAAAAGAAAACTTCCAGCCGTAGACGTGCTCCTTCATCGGTGCTTTGGAAACCTCTGGTGCTGTCAGAAGTTGAATTCTGTCCTGAGGTTATTCAGCAATACACACTTGGATGTGAGAGCAAGAAGGTTAGGGAACTCTTGAAGACAAAAGTGAGAAACCATCTTGCTTATATTGGGTGGACAATTGAAGTGACTGAAGACAAGTTGCCTGGGCGGTACAGATACAGATACAAACCACCTGGTGAACAAGGCCCAAAAGTTTACACTTCAATTGCCAAAGCTTGTAGATATATTAAGCAAAATGATCCTGTGGTGTCCCAAAATGATATCTCTAAGGAGAAAGGCGATTCCGCAGATCTAATGGATTGTGATAAAAAGTCTCGTAGCATTGATCACATTCAAAAGGAAAACAATATAGATACTTCGATTGCTGGGGCCTCTAATGAGCAAAATATGGCAGAGTTAAATACGAATGTACCTGAGGAGGAAGATGCGATGTCAAGAGAACCTATATCACCACTTCAGCAAATTTTTCCTGAAGATCAAAAGAAAAGTTCTAGCCGCGGACCGGTGCTTTGGAAACCTCTGGTGCTGTCAGAAGTTGAATTCTGTCCTGAGATTATTCAGCAATACACAGTTGGATGTGAGAGCAAAACGGTTAGGGAACTCTTGAAGACAAAAGTGAGAAAACATCTTGCTTATATTGGATGGACAATTGAAGTGACTGAAGACAGGTATTTTCCTGGGCGATACAGATACAGATACAAACCACCTGGTGAACAAGGCCCAAAAGTTTACACTTCAATTGCCAAAGCTTGTAGATATATTAAACAAAATGATTCTGTGGTGTCCCAAAATGACCTGGGTAGGATGCATGATATGGTTGATAGTAGCATTCTGAATCTTCTTTCTGATCAATCGCGTAGGAATCAGGTTGATGATGCTTATTCTTCTGCGGAAGTTGCAGTTGAACCTGAATTTTGTCCAGAAGCTGTTGTGAAATATTACTTGCATGCATTAGAGAATCACCATGCCGATAAAAGGAAATGGAAATTGAAAGCAAAACAGCATCTGCTAGCAGAAGGATGGGTTTTGGACTATCCAACTCAGAAACGGAGGAGAACGTTGTACCACTCTCCGAAAAATCAGACTTTGGGAACACTTCAAGGTGCTTGCAGGCTATACATTAAAGAAAGTATTCCCAAATGGACAATTTCTGGCATCAGACCTTTGAATCTCTCAGTTGGTAACGAAGAAAGTGTTCACAGAGATGATCTATTACATTGTGTCTCACAATTGCTTCAAAGGGAGCCTGAATTACATGATGGATTGCCAGTGAGTACCTCAAATAGGAATAGGAGTAAAAACCATCCATGCTCGAGGAATTCAAAGAATAGCTCCCGAAAGCGCCAAGGCAATCGAGTACCTACACGTGTGCTAAGATCAAGCAAGAGGGTGCAGAAAGTGCTTGCGCCTGGACTCGTACACCAAAAACCTCAAAATATTTTCTCTTGGTTAATAGATAACAACATATTGTCGACAAGGTGTAAGGTCTATTGCAGGGGAAAACGTGGCAAGAGTTCAATTGAGGCTGAGGGTCGCATAAGTCGTGAAGGAATCAAGTGCTGCTGTTGTCAAGAGATATACAGTCTTTGTGGCTTTGCTAATCATGCTGATGCCAGTAGGAACCACAGACCTTCTGCTAGTATCTTCTTGAAAGACGGTCGCTCGCTACTGGATTGCCTGATTCAAGTAATGCAAGATAAAAGGAAGGAGGAGAAAATGAAAAAAGAATCTAATTATCTTTGTCAAGGCGAAAATGACAACATTTGTTCTGTTTGTCAGTATGGGGGTGAACTTGTCTTGTGTGATCAATGCCCGTCTGCATTTCATATGAGTTGTCTAGGTTTGGCGGATCTTCCTGATGGTGATTGGTTTTGTCCATCATGTCGATGCGGGATTTGCAGCCAAAGCAAAATCAAGGGGGATGAGGATGGACATTTTCTTAATTGCATTCAATGTGAACGTAAATATCATCTTGGGTGCTTGAAAAATAGAACAGTAGATGAATTAAGACATATGGAAAAATGGTTCTGTGGAAACAAATGTGAACAGATACACACCAGCCTGCATAAACTATTAGGAAAGCCAATTTCAGTGGATGCAAACAATCTAACTTGGACATTGGTCAAGTCTGTTGACTCTGAGAACTGTGAAGTTAATTCTGCTAAAGACGAATACTTGGCAGAGAATTACAGCAAACTCAATATTGCACTTTCTGTGATGCATGAATGCTTTGAGCCCCTACAGAACCCTTCCTCTAGCAGGGATCTCATGGAAGATGTCATATTCAGCAGATGGTCAGAGCTTAATAGAACGAATTTCCAGGGTTTCTACACTGTAATTCTTGAGAGAAATGAAGAACTGATAAGTGTGGCAACTTTTAGGGTGTATGGAGAGAAGGTCGCAGAAGTACCACTTGTAGGTACCAGATTTCAGTATCGTCGACTTGGAATGTGTCGCATTTTAATGAATGAACTCGAAAAGATGCTCTCACAGCTAGGGGTAGAGAGGCTAGTTTTGCCTGCTGTTCCCGGGGTGCTCGATACATGGACCAATTCTTTTGGCTTCGACCCGATGACAGAATTCCAAAGATCACAGTTTCTGGACTACACTTTCCTAGATTTCCAAGGAACCACCATGTGCCAAAAGCTGTTGAGAAAGGAGAGTCCATCTCCGGATTCGGTTATAACAAGAGATATTCAGCCAGCATCAAGCTCTGTTAAATGTAAAATTGATTTTGAAAAGTTCAGTTCGGGATCCGATGAAGTATACCGAGCAGAGGATACTGATGAAAGTAGAATGACAAATACACAAATGGAGTGTTTCTCGCAGTTGTCGACGATGACACAAGAAAATAAATCTGAATAA 3978 0.4173 MAVDVVKCNAIRKRKRASMKRKLLVNDRVEVRSVEDGFMGSWHPGTVIHSGKQKRHVRYDNVLEDDGSNYVVDVVAVSPVVDGVGVSYSKVERGYIRPVPPLFEFGGWDLPFGLCVDVSYQEAWWEGVVFDHSNGMDERRVFFPDLGDEMKIGIHHLRITHDWDEFADDWRPRGKWVFLELIEECEKLSYVAVSVKQIWYDVRVRKEFDSLIRDWTCDEKKLWRDLVMEVAGDYYALTLQDLLPALNLEMDFSEETQRIELVEPTANAFGSCTRTTDALEEKGDSADLMDCDKNSGSIDHIQKENNIDTLIAGASNEQNIAELNMNVPKEEDVMSREPISPIQQIFPKDQKKTSSRRRAPSSVLWKPLVLSEVEFCPEVIQQYTLGCESKKVRELLKTKVRNHLAYIGWTIEVTEDKLPGRYRYRYKPPGEQGPKVYTSIAKACRYIKQNDPVVSQNDISKEKGDSADLMDCDKKSRSIDHIQKENNIDTSIAGASNEQNMAELNTNVPEEEDAMSREPISPLQQIFPEDQKKSSSRGPVLWKPLVLSEVEFCPEIIQQYTVGCESKTVRELLKTKVRKHLAYIGWTIEVTEDRYFPGRYRYRYKPPGEQGPKVYTSIAKACRYIKQNDSVVSQNDLGRMHDMVDSSILNLLSDQSRRNQVDDAYSSAEVAVEPEFCPEAVVKYYLHALENHHADKRKWKLKAKQHLLAEGWVLDYPTQKRRRTLYHSPKNQTLGTLQGACRLYIKESIPKWTISGIRPLNLSVGNEESVHRDDLLHCVSQLLQREPELHDGLPVSTSNRNRSKNHPCSRNSKNSSRKRQGNRVPTRVLRSSKRVQKVLAPGLVHQKPQNIFSWLIDNNILSTRCKVYCRGKRGKSSIEAEGRISREGIKCCCCQEIYSLCGFANHADASRNHRPSASIFLKDGRSLLDCLIQVMQDKRKEEKMKKESNYLCQGENDNICSVCQYGGELVLCDQCPSAFHMSCLGLADLPDGDWFCPSCRCGICSQSKIKGDEDGHFLNCIQCERKYHLGCLKNRTVDELRHMEKWFCGNKCEQIHTSLHKLLGKPISVDANNLTWTLVKSVDSENCEVNSAKDEYLAENYSKLNIALSVMHECFEPLQNPSSSRDLMEDVIFSRWSELNRTNFQGFYTVILERNEELISVATFRVYGEKVAEVPLVGTRFQYRRLGMCRILMNELEKMLSQLGVERLVLPAVPGVLDTWTNSFGFDPMTEFQRSQFLDYTFLDFQGTTMCQKLLRKESPSPDSVITRDIQPASSSVKCKIDFEKFSSGSDEVYRAEDTDESRMTNTQMECFSQLSTMTQENKSE 1325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241723g00002 1325 Pfam Tify domain binding domain 882 933 IPR032308 -
Stsc241723g00002 1325 SUPERFAMILY FYVE/PHD zinc finger 937 1000 IPR011011 -
Stsc241723g00002 1325 SMART PHD_3 959 1000 IPR001965 -
Stsc241723g00002 1325 SMART PHD_3 1001 1053 IPR001965 -
Stsc241723g00002 1325 Pfam Agenet domain 26 101 IPR008395 -
Stsc241723g00002 1325 MobiDBLite consensus disorder prediction 1305 1325 - -
Stsc241723g00002 1325 CDD PHD2_CHD_II 960 999 - -
Stsc241723g00002 1325 CDD Tudor_Agenet_AtDUF_rpt1_3 25 101 - -
Stsc241723g00002 1325 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 950 1000 IPR013083 -
Stsc241723g00002 1325 ProSiteProfiles Zinc finger PHD-type profile. 957 1002 IPR019787 -
Stsc241723g00002 1325 MobiDBLite consensus disorder prediction 794 810 - -
Stsc241723g00002 1325 Gene3D - 1109 1239 - -
Stsc241723g00002 1325 Pfam PHD-finger 959 1001 IPR019787 -
Stsc241723g00002 1325 CDD NAT_SF 1150 1210 - -
Stsc241723g00002 1325 MobiDBLite consensus disorder prediction 1294 1325 - -
Stsc241723g00002 1325 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 1094 1255 IPR000182 GO:0016747
Stsc241723g00002 1325 MobiDBLite consensus disorder prediction 789 828 - -
Stsc241723g00002 1325 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 1109 1236 IPR016181 -
Stsc241723g00002 1325 PANTHER PHD FINGER PROTEIN 12 672 1307 IPR042163 GO:0003714|GO:0045892
Stsc241723g00002 1325 SMART agenet_At_2 21 85 IPR014002 -
Stsc241723g00002 1325 SMART agenet_At_2 108 165 IPR014002 -
Stsc241723g00002 1325 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1001 1055 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241723g00002 Stsc-Chr241723 6315 12868 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241723g00002 23 451 PHD Transcription Factor Family AT5G58610 34.773 5.83e-66 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Stsc241723g00002 Agenet 1.4e-15 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241723g00002 - - adu:107471457 1480.31