Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241723g00001 ATGGCGGTTGACGTCGTCAAGTGTAATGCAATCAGAAAACGCAAAAGAGCATCGATGAAACGAAAACTTCTTGTTAACGACAGAGTTGAGGTGAGGAGTGTGGAAGATGGGTTTATGGGGTCATGGCACCCGGGTACAGTTATACATTCTGGCAAACAAAAGCGTCACGTGAGGTATGACAATGTGTTGGAAGATGATGGATCAAACTACGTTGTTGATGTGGTTGCTGTTTCGCCGGTTGTGGATGGTGTTGGTGTTTCATATTCTAAAGTTGAGCGTGGCTACATTAGGCCAGTGCCTCCATTGTTTGAATTTGGTGGATGGGACCTCCCATTTGGACTCTGCGTCGACGTTAGTTACCAAGAAGCATGGTGGGAAGGCGTTGTTTTTGATCACTCCAATGGAATGGATGAGAGAAGAGTCTTTTTCCCTGACTTGGGTGATGAGATGAAAATTGGGATCCATCATTTGAGGATAACTCATGATTGGGATGAATTTGCAGACGATTGGAGGCCAAGGGGGAAGTGGGTTTTTCTTGAATTGATTGAGGAGTGTGAGAAGTTGTCTTATGTTGCTGTCTCAGTGAAGCAGATTTGGTATGATGTGAGGGTTAGGAAGGAGTTTGATAGCCTTATTAGGGATTGGACTTGTGATGAGAAGAAATTGTGGAGAGATCTTGTTATGGAGGTAGCTGGTGACTACTATGCTCTCACATTGCAAGACCTTTTGCCCGCATTAAACCTTGAAATGGATTTCTCGGAAGAAACACAAAGAATTGAGTTAGTTGAGCCTACTGCTAATGCATTTGGTTCTTGCACAAGAACAACTGATGCCTTGGAGGAGAAAGGCGACTCAGCAGATCTAATGGATTGCGATAAAAACTCCGGTAGCATTGATCACATTCAAAAGGAAAACAATATAGATACTTTGATTGCCGGGGCCTCTAATGAGCAAAATATAGCAGAGTTAAATATGAATGTACCTAAGGAGGAAGATGTGATGTCAAGAGAACCTATATCACCAATTCAGCAAATTTTTCCTAAAGATCAAAAGAAAACTTCCAGCCGTAGACGTGCTCCTTCATCGGTGCTTTGGAAACCTCTGGTGCTGTCAGAAGTTGAATTCTGTCCTGAGGTTATTCAGCAATACACACTTGGATGTGAGAGCAAGAAGGTTAGGGAACTCTTGAAGACAAAAGTGAGAAACCATCTTGCTTATATTGGGTGGACAATTGAAGTGACTGAAGACAAGTTGCCTGGGCGGTACAGATACAGATACAAACCACCTGGTGAACAAGGCCCAAAAGTTTACACTTCAATTGCCAAAGCTTGTAGATATATTAAGCAAAATGATCCTGTGGTGTCCCAAAATGATATCTCTAAGGAGAAAGGCGATTCCGCAGATCTAATGGATTGTGATAAAAAGTCTCGTAGCATTGATCACATTCAAAAGGAAAACAATATAGATACTTCGATTGCTGGGGCCTCTAATGAGCAAAATATGGCAGAGTTAAATACGAATGTACCTGAGGAGGAAGATGCGATGTCAAGAGAACCTATATCACCACTTCAGCAAATTTTTCCTGAAGATCAAAAGAAAAGTTCTAGCCGCGGACCGGTGCTTTGGAAACCTCTGGTGCTGTCAGAAGTTGAATTCTGTCCTGAGATTATTCAGCAATACACAGTTGGATGTGAGAGCAAAACGGTTAGGGAACTCTTGAAGACAAAAGTGAGAAAACATCTTGCTTATATTGGATGGACAATTGAAGTGACTGAAGACAGGTATTTTCCTGGGCGATACAGATACAGATACAAACCACCTGGTGAACAAGGCCCAAAAGTTTACACTTCAATTGCCAAAGCTTGTAGATATATTAAACAAAATGATTCTGTGGTGTCCCAAAATGACCTGGGTAGGATGCATGATATGGTTGATAGTAGCATTCTGAATCTTCTTTCTGATCAATCGCGTAGGAATCAGGTTGATGATGCTTATTCTTCTGCGGAAGTTGCAGTTGAACCTGAATTTTGTCCAGAAGCTGTTGTGAAATATTACTTGCATGCATTAGAGAATCACCATGCCGATAAAAGGAAATGGAAATTGAAAGCAAAACAGCATCTGCTAGCAGAAGGATGGGTTTTGGACTATCCAACTCAGAAACGGAGGAGAACGTTGTACCACTCTCCGAAAAATCAGACTTTGGGAACACTTCAAGGTGCTTGCAGGCTATACATTAAAGAAAGTATTCCCAAATGGACAATTTCTGGCATCAGACCTTTGAATCTCTCAGTTGGTAACGAAGAAAGTGTTCACAGAGATGATCTATTACATTGTGTCTCACAATTGCTTCAAAGGGAGCCTGAATTACATGATGGATTGCCAGTGAGTACCTCAAATAGGAATAGGAGTAAAAACCATCCATGCTCGAGGAATTCAAAGAATAGCTCCCGAAAGCGCCAAGGCAATCGAGTACCTACACGTGTGCTAAGATCAAGCAAGAGGGTGCAGAAAGTGCTTGCGCCTGGACTCGTACACCAAAAACCTCAAAATATTTTCTCTTGGTTAATAGATAACAACATATTGTCGACAAGGTGTAAGGTCTATTGCAGGGGAAAACGTGGCAAGAGTTCAATTGAGGCTGAGGGTCGCATAAGTCGTGAAGGAATCAAGTGCTGCTGTTGTCAAGAGATATACAGTCTTTGTGGCTTTGCTAATCATGCTGATGCCAGTAGGAACCACAGACCTTCTGCTAGTATCTTCTTGAAAGACGGTCGCTCGCTACTGGATTGCCTGATTCAAGTAATGCAAGATAAAAGGAAGGAGGAGAAAATGAAAAAAGAATCTAATTATCTTTGTCAAGGCGAAAATGACAACATTTGTTCTGTTTGTCAGTATGGGGGTGAACTTGTCTTGTGTGATCAATGCCCGTCTGCATTTCATATGAGTTGTCTAGGTTTGGCGGATCTTCCTGATGGTGATTGGTTTTGTCCATCATGTCGATGCGGGATTTGCAGCCAAAGCAAAATCAAGGGGGATGAGGATGGACATTTTCTTAATTGCATTCAATGTGAACGTAAATATCATCTTGGGTGCTTGAAAAATAGAACAGTAGATGAATTAAGACATATGGAAAAATGGTTCTGTGGAAACAAATGTGAACAGATACACACCAGCCTGCATAAACTATTAGGAAAGCCAATTTCAGTGGATGCAAACAATCTAACTTGGACATTGGTCAAGTCTGTTGACTCTGAGAACTGTGAAGTTAATTCTGCTAAAGACGAATACTTGGCAGAGAATTACAGCAAACTCAATATTGCACTTTCTGTGATGCATGAATGCTTTGAGCCCCTACAGAACCCTTCCTCTAGCAGGGATCTCATGGAAGATGTCATATTCAGCAGATGGTCAGAGCTTAATAGAACGAATTTCCAGGGTTTCTACACTGTAATTCTTGAGAGAAATGAAGAACTGATAAGTGTGGCAACTTTTAGGGTGTATGGAGAGAAGGTCGCAGAAGTACCACTTGTAGGTACCAGATTTCAGTATCGTCGACTTGGAATGTGTCGCATTTTAATGAATGAACTCGAAAAGATGCTCTCACAGCTAGGGGTAGAGAGGCTAGTTTTGCCTGCTGTTCCCGGGGTGCTCGATACATGGACCAATTCTTTTGGCTTCGACCCGATGACAGAATTCCAAAGATCACAGTTTCTGGACTACACTTTCCTAGATTTCCAAGGAACCACCATGTGCCAAAAGCTGTTGAGAAAGGAGAGTCCATCTCCGGATTCGGTTATAACAAGAGATATTCAGCCAGCATCAAGCTCTGTTAAATGTAAAATTGATTTTGAAAAGTTCAGTTCGGGATCCGATGAAGTATACCGAGCAGAGGATACTGATGAAATGTTCACGCCTCCTTGCCGCCATCCCCTCATCCGCCGTAACCGTCGCCGTCTTCCTGCAGGAAAAGAAGGGAAGGAACAATTGTTCATGGGTTGGGAGCACATTGGAAGAAATGGCAGCGACGAAGCTGGTACTAGCGGCACCACCCCCACGACCTCAGAGCCGCGGTTCCCTCTTGCTGCTCAGCCTGAGATGATGCGGGCCGCCGAGAAGGACGAACAGTATGCCTCTTTCGTCTACGAAGCCTGTCGTGATGCTTTCCGCCATCTCTTCGGTACGAGGGTTGCTGTTGCTTATCAAAATGAGACAAAACTCTTGGGGCAAATGTTGTACTATGTTCTCACAACAGGTTCAGGGCAGCAAACGCTTGGGGAGGAGTACTGTGACATCACTCAGGTTGCTGGCCCTTATGGGCTGCCTCCTACACCAGCAAGGCGCACTCTTTTCATTGTATACCAGACAGCTATTCCTTATATTGCAGATCGTATTAGTTCACGAATTGCTTCCCGCGGCATTGCCCTTGCTGATTCAGAGTTTGCTGAGAGTTATGGTGAAAGTGTAATCAGGAGCAGTAGTTCACAGGACTCTGCTGCTAGTCCTTCGACATCAGGACAACATAGTACAACTCTTTCAAGATTGAAACAAAAACTGAGTGGTTTTTGGCTGCATGTGGTTCAGCGATGGCCTGTGATGCTCCCTTTTGTGCGTGATTTGATACAGCTGGTTCTTCGTGCTAATCTAATGCTGTTCTACTTTGAAGGCCTTTATTATCATATATCCAAGCGTGCTGCAGGCATTCGATATGTCTTCATTGGAAAATCATCAAATCAAAGACCCAGATACCAAATACTAGGAGTATTTCTGCTGATTCAACTGTGTGTAATAGCTGCAGAAAGGCTACGCCGAAGAAATTTATCTTCAATTGCTGGCTCAGTTCATCAGGCATCCTTTGCAACCCAACAGAGATCAGCAGGACATGGTTTGCCTGTTTTGAATGAAGAAGGTAATCTGGCATCTCTAGATACTGACGAAGGAAGTTGGGTCTTTGATTCTTCGTCTTCTGAGTATGGGACTAGCAAATGCACTCTTTGCCTAAGTAATCGTCAACATCCAACAGCTACATCCTGTGGCCATGTATTTTGCTGGAACTGTATCACAGAATGGTGCAATGAAAAGCCAGAGTGTCCTCTTTGCCGCACCCCAATAACACATTCCAGTTTAGTTTGTGTGTATCATTCAGACTTCTAG 5151 0.4314 MAVDVVKCNAIRKRKRASMKRKLLVNDRVEVRSVEDGFMGSWHPGTVIHSGKQKRHVRYDNVLEDDGSNYVVDVVAVSPVVDGVGVSYSKVERGYIRPVPPLFEFGGWDLPFGLCVDVSYQEAWWEGVVFDHSNGMDERRVFFPDLGDEMKIGIHHLRITHDWDEFADDWRPRGKWVFLELIEECEKLSYVAVSVKQIWYDVRVRKEFDSLIRDWTCDEKKLWRDLVMEVAGDYYALTLQDLLPALNLEMDFSEETQRIELVEPTANAFGSCTRTTDALEEKGDSADLMDCDKNSGSIDHIQKENNIDTLIAGASNEQNIAELNMNVPKEEDVMSREPISPIQQIFPKDQKKTSSRRRAPSSVLWKPLVLSEVEFCPEVIQQYTLGCESKKVRELLKTKVRNHLAYIGWTIEVTEDKLPGRYRYRYKPPGEQGPKVYTSIAKACRYIKQNDPVVSQNDISKEKGDSADLMDCDKKSRSIDHIQKENNIDTSIAGASNEQNMAELNTNVPEEEDAMSREPISPLQQIFPEDQKKSSSRGPVLWKPLVLSEVEFCPEIIQQYTVGCESKTVRELLKTKVRKHLAYIGWTIEVTEDRYFPGRYRYRYKPPGEQGPKVYTSIAKACRYIKQNDSVVSQNDLGRMHDMVDSSILNLLSDQSRRNQVDDAYSSAEVAVEPEFCPEAVVKYYLHALENHHADKRKWKLKAKQHLLAEGWVLDYPTQKRRRTLYHSPKNQTLGTLQGACRLYIKESIPKWTISGIRPLNLSVGNEESVHRDDLLHCVSQLLQREPELHDGLPVSTSNRNRSKNHPCSRNSKNSSRKRQGNRVPTRVLRSSKRVQKVLAPGLVHQKPQNIFSWLIDNNILSTRCKVYCRGKRGKSSIEAEGRISREGIKCCCCQEIYSLCGFANHADASRNHRPSASIFLKDGRSLLDCLIQVMQDKRKEEKMKKESNYLCQGENDNICSVCQYGGELVLCDQCPSAFHMSCLGLADLPDGDWFCPSCRCGICSQSKIKGDEDGHFLNCIQCERKYHLGCLKNRTVDELRHMEKWFCGNKCEQIHTSLHKLLGKPISVDANNLTWTLVKSVDSENCEVNSAKDEYLAENYSKLNIALSVMHECFEPLQNPSSSRDLMEDVIFSRWSELNRTNFQGFYTVILERNEELISVATFRVYGEKVAEVPLVGTRFQYRRLGMCRILMNELEKMLSQLGVERLVLPAVPGVLDTWTNSFGFDPMTEFQRSQFLDYTFLDFQGTTMCQKLLRKESPSPDSVITRDIQPASSSVKCKIDFEKFSSGSDEVYRAEDTDEMFTPPCRHPLIRRNRRRLPAGKEGKEQLFMGWEHIGRNGSDEAGTSGTTPTTSEPRFPLAAQPEMMRAAEKDEQYASFVYEACRDAFRHLFGTRVAVAYQNETKLLGQMLYYVLTTGSGQQTLGEEYCDITQVAGPYGLPPTPARRTLFIVYQTAIPYIADRISSRIASRGIALADSEFAESYGESVIRSSSSQDSAASPSTSGQHSTTLSRLKQKLSGFWLHVVQRWPVMLPFVRDLIQLVLRANLMLFYFEGLYYHISKRAAGIRYVFIGKSSNQRPRYQILGVFLLIQLCVIAAERLRRRNLSSIAGSVHQASFATQQRSAGHGLPVLNEEGNLASLDTDEGSWVFDSSSSEYGTSKCTLCLSNRQHPTATSCGHVFCWNCITEWCNEKPECPLCRTPITHSSLVCVYHSDF 1716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241723g00001 1716 MobiDBLite consensus disorder prediction 1342 1357 - -
Stsc241723g00001 1716 Gene3D - 1109 1239 - -
Stsc241723g00001 1716 Pfam Tify domain binding domain 882 933 IPR032308 -
Stsc241723g00001 1716 SMART PHD_3 959 1000 IPR001965 -
Stsc241723g00001 1716 SMART PHD_3 1001 1053 IPR001965 -
Stsc241723g00001 1716 SUPERFAMILY FYVE/PHD zinc finger 937 1000 IPR011011 -
Stsc241723g00001 1716 SMART ring_2 1001 1055 IPR001841 -
Stsc241723g00001 1716 SMART ring_2 960 999 IPR001841 -
Stsc241723g00001 1716 SMART ring_2 1662 1699 IPR001841 -
Stsc241723g00001 1716 CDD Tudor_Agenet_AtDUF_rpt1_3 25 101 - -
Stsc241723g00001 1716 CDD PHD2_CHD_II 960 999 - -
Stsc241723g00001 1716 ProSiteProfiles Zinc finger RING-type profile. 1662 1700 IPR001841 -
Stsc241723g00001 1716 MobiDBLite consensus disorder prediction 1337 1357 - -
Stsc241723g00001 1716 Pfam Pex2 / Pex12 amino terminal region 1373 1603 IPR006845 -
Stsc241723g00001 1716 PANTHER PHD FINGER PROTEIN 12 672 1284 IPR042163 GO:0003714|GO:0045892
Stsc241723g00001 1716 Pfam Agenet domain 26 101 IPR008395 -
Stsc241723g00001 1716 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 1094 1255 IPR000182 GO:0016747
Stsc241723g00001 1716 CDD RING-HC_PEX10 1660 1711 - -
Stsc241723g00001 1716 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1643 1713 IPR013083 -
Stsc241723g00001 1716 FunFam Peroxisome biogenesis factor 10 1641 1713 - -
Stsc241723g00001 1716 ProSitePatterns Zinc finger RING-type signature. 1677 1686 IPR017907 -
Stsc241723g00001 1716 Pfam PHD-finger 959 1001 IPR019787 -
Stsc241723g00001 1716 ProSiteProfiles Zinc finger PHD-type profile. 957 1002 IPR019787 -
Stsc241723g00001 1716 MobiDBLite consensus disorder prediction 794 810 - -
Stsc241723g00001 1716 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 1109 1236 IPR016181 -
Stsc241723g00001 1716 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1001 1055 IPR013083 -
Stsc241723g00001 1716 SUPERFAMILY RING/U-box 1655 1705 - -
Stsc241723g00001 1716 CDD NAT_SF 1150 1210 - -
Stsc241723g00001 1716 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 950 1000 IPR013083 -
Stsc241723g00001 1716 MobiDBLite consensus disorder prediction 789 828 - -
Stsc241723g00001 1716 SMART agenet_At_2 21 85 IPR014002 -
Stsc241723g00001 1716 SMART agenet_At_2 108 165 IPR014002 -
Stsc241723g00001 1716 Pfam Zinc finger, C3HC4 type (RING finger) 1660 1705 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241723g00001 Stsc-Chr241723 649 12868 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241723g00001 23 455 PHD Transcription Factor Family AT5G58610 34.685 1.53e-65 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Stsc241723g00001 Pex2_Pex12 2.7e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241723g00001 - - adu:107471457 1456.81