Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241719g00020 ATGGAAGAAGAAATAATGGTGATGGGAACATTGGAGCAGCTAAGTAGTGTATCTCCTCTTTCATCATCATCATCTTCATCTTCTCCCACCACTCATGATAATAATAACATTAATAGTAGCATAAATAACCACCCTTCTTCTTCTTCATCTTCTTGTTCATCACTTTGTGTCTCAAATGTCTCAACAAAAAGAACCGATTTGAGCACCGACCTCAGACTTGGCCTTAGCCTCTCTCCTTCTCAACAATTGCCTTCCATTTCATCGCAACAAATAAGGGAGCATAGAAGTTTTGATTGCTGGCCACCGGTGAAGTCAACGTTGAGAAGCACCCTGGTTGAGAAAAGTCAAACAACATCATCATCATCATCTCTGTTTGTGAAAGTGTACATGGAAGGCATCCCCATAGGTAGGAAGCTGAATCTGCGGGCACACCATAGTTACCATGCTCTTGTTAAAGCTCTTTCTCACATGTTCAAGACCACCATACTCTGCCCTGGCTCTCATCAATTGCCGCTAAAGTCTGGGAATGTTCATGTTCTTACTTATGAGGATCAAGAAGGAGATTGGATGATGGTTGGAGATGTACCATGGGAGATGTTCTTGACAAGTGTGAAGAAGCTGAAGATCACAAGAGCTGACAGATGCTAA 648 0.4228 MEEEIMVMGTLEQLSSVSPLSSSSSSSSPTTHDNNNINSSINNHPSSSSSSCSSLCVSNVSTKRTDLSTDLRLGLSLSPSQQLPSISSQQIREHRSFDCWPPVKSTLRSTLVEKSQTTSSSSSLFVKVYMEGIPIGRKLNLRAHHSYHALVKALSHMFKTTILCPGSHQLPLKSGNVHVLTYEDQEGDWMMVGDVPWEMFLTSVKKLKITRADRC 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241719g00020 215 Pfam AUX/IAA family 89 211 IPR033389 -
Stsc241719g00020 215 ProSiteProfiles PB1 domain profile. 123 214 IPR000270 GO:0005515
Stsc241719g00020 215 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 66 213 IPR003311 GO:0005634|GO:0006355
Stsc241719g00020 215 Gene3D - 117 215 - -
Stsc241719g00020 215 SUPERFAMILY CAD & PB1 domains 114 209 - -
Stsc241719g00020 215 MobiDBLite consensus disorder prediction 11 51 - -
Stsc241719g00020 215 MobiDBLite consensus disorder prediction 1 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241719g00020 Stsc-Chr241719 113746 115171 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241719g00020 119 209 B3 DNA Binding Superfamily AT4G23980 35.165 1.06e-11 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Stsc241719g00020 AUX_IAA 4.5e-35 CL0072