Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241718g00005 ATGGATCCACCAAAGAAATCTAATAAGATCAAGGACATTGTTAGGCTTCAACAGATCCTCAAGAAATGGAGAAGGATGGCCAACTCTTCAAAATCAAGTAACAACAACAACAGCAACAACAATCATGGAGGAAGTAAAGGCATTAAGTTTCTGAAAAGGACACTTTCTTTGTCCGATCGCGACAAAGAATCATCGAGCAATGCGGTTCCAAAAGGATACTTAGCTGTTTGTGTTGGACTAGAGCTCAAGCGATTCGTCATACCGACCGAGTATCTTGGTCATCAAGCCTTTCACATGTTGCTCAGAGAAGCCGAAGAGGAGTTTGGATTTGAGCAAACCGGAGTTCTGAGGATTCCGTGCGAAGTATCTGTGTTTGAGAGTGTTCTGAAGATGGTGGAGGAAAAGGACAAGTTTTCGGCTCAAAACTGCGGATTATTCGGTGTTGAAAAGATGATGATGGGGTACTGCTCCTTCAATCACCTTACTTATTCTCATCACCCTCAAAGTCCTATGTGCAGATAG 522 0.4291 MDPPKKSNKIKDIVRLQQILKKWRRMANSSKSSNNNNSNNNHGGSKGIKFLKRTLSLSDRDKESSSNAVPKGYLAVCVGLELKRFVIPTEYLGHQAFHMLLREAEEEFGFEQTGVLRIPCEVSVFESVLKMVEEKDKFSAQNCGLFGVEKMMMGYCSFNHLTYSHHPQSPMCR 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241718g00005 173 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 54 128 IPR003676 GO:0009733
Stsc241718g00005 173 MobiDBLite consensus disorder prediction 24 47 - -
Stsc241718g00005 173 Pfam Auxin responsive protein 21 132 IPR003676 GO:0009733
Stsc241718g00005 173 MobiDBLite consensus disorder prediction 24 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241718g00005 Stsc-Chr241718 34423 35296 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241718g00005 5 173 Calmodulin-binding Proteins AT2G24400 58.564 3.14e-60 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241718g00005 K14488 - pvu:PHAVU_009G103800g 246.514