Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241717g00013 ATGATGGATAGTAATAATAATAATAATTTTCCAGCATCATCAGCAGCAACAAGTTCAGGAAACTCAACCCCTGCAGCTTCTCATCACAGTGAAAGCAAGATTACTAAAAATAATAATGGGTGTGGTGGAAGAGGGAAGAGAGTGAAGAGCAATAAAACAGAAGAAGATGAGAAGAAACAAAAGAAGGAAGTGGTTCATGTCAGAGCAAGAAGAGGTCAAGCCACTGATAGTCACAGCATAGCTGAAAGGGTTAGAAGGGGAAAAATCAATGAAAAATTAAGATGCCTACAAAACATTGTCCCAGGATGTTACAAGACCATGGGCATGGCGGTTATGTTGGATGAAATCATAAACTATGTTCAATCCTTGCAACACCAAGTAGAGTTCCTTTCTTTGAAGCTCACAGCAGCAAGTACCTTTTATGACTTCAATTCAGAGACAGATGCTTTGGAAACAATGCAGAGAGCAAGGGCATCCGAGGCAAAAGAGTTAGGCAAGTATGGGAAAGAAGGGCATGGAGGAGTTTCTTGCTATCAACCAAATTGGCATCTTCTTTGA 558 0.4032 MMDSNNNNNFPASSAATSSGNSTPAASHHSESKITKNNNGCGGRGKRVKSNKTEEDEKKQKKEVVHVRARRGQATDSHSIAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQVEFLSLKLTAASTFYDFNSETDALETMQRARASEAKELGKYGKEGHGGVSCYQPNWHLL 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241717g00013 185 SMART finulus 79 129 IPR011598 GO:0046983
Stsc241717g00013 185 MobiDBLite consensus disorder prediction 47 78 - -
Stsc241717g00013 185 Pfam Helix-loop-helix DNA-binding domain 77 124 IPR011598 GO:0046983
Stsc241717g00013 185 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 73 123 IPR011598 GO:0046983
Stsc241717g00013 185 Gene3D - 69 139 IPR036638 GO:0046983
Stsc241717g00013 185 FunFam transcription factor BEE 3-like 70 141 - -
Stsc241717g00013 185 MobiDBLite consensus disorder prediction 1 39 - -
Stsc241717g00013 185 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 19 150 IPR024097 GO:0006355
Stsc241717g00013 185 MobiDBLite consensus disorder prediction 1 78 - -
Stsc241717g00013 185 CDD bHLH_AtBPE_like 64 148 - -
Stsc241717g00013 185 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 71 140 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241717g00013 Stsc-Chr241717 110085 111433 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241717g00013 35 184 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G73830 67.550 1.03e-60 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc241717g00013 HLH 5.5e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241717g00013 - - adu:107490384 310.842