Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241717g00011 ATGGGTTTCATCTCCATACTCTGCCCCTGCATGGACACCACTCGTCTCAGGGGACCTGCCGAATCCCCCCACGACCCCGGCGACGGTGACGCCGCTGACACCTTCGACCTCTTCTTCGGCCTCCACACCCTCCAGCTCGCCACCAATTTCTTCTCAGACCTCAACCAGCTTGGCCATGGAGGCTTTGGCCCTGTTTACAAGGGCTTGATGCCTAATGGTCAAGTAGTAGCTGTTAAGAAGCTTTCATTACAATCAAGACAAGGAGTTAAAGAGTTTACCAACGAAGTCAAGCTGTTACTCAAAATTCAGCACAAAAACTTGGTTACTCTCCTTGGATGCTGTATAGAAGGACCTGAAAAGATGCTTGTTTATGAGTATCTGCCCAACAAAAGCCTTGATCACTTTCTCTTTGATAAAACAAACTCTTCATCTCTGGACTGGACAACACGGTTTAATATAGTTACAGGAGTCGCGAGAGGACTTCTCTACCTGCACGAGGAGGCCCCGGAAAGAATAATTCACAGAGATATCAAAGCTAGCAATATATTACTTGACGAGAGGCTAAATCCAAAAATTTCGGACTTCGGTTTGGCAAGGCTGTTTCCTGGAGATGATACTCATGTCCAGACATTCAGGATTTCCGGTACACATGGTTACATGGCTCCTGAATATGCAATGCGCGGATATCTATCGGTGAAGACAGATGTCTTCAGTTTTGGGATCTTGGTGCTGGAATTAATTAGTGGGAGGAAAAATCACGACGTGCAGTTCGGTGCAGAAAAGGCTGATCTCTTGAACTATGCATGGATACTTTATCAGGAAGGGAAAATTATGGATTTGGTTGACCAAACTCTTGGCAAATACAACCCTGATGAGGCAGCAATGTGCATTCAGCTTGGTTTGTTGTGCTGTCAAGCAAGTATAGTAGATAGGCCTGACATGAATTCGGTTCATCTCATGCTTTCAAGTGATTCTTTCACATTGCCAATACCAGGTAAACCCGGAATCCAAGGCCGTGTCGGACGTTGGACCACGACCACCACCGCTGCTTTTACCAATACTAATGCTAGTAGTGTAACCAAGGCTTTAGGAGGTAGTAGGGCTTCAGGATCTAGTAATTATCTGGAGGATTTTTCTAGGAATTCTATCTCCACTTCTTCTTTTGATGAAGGCAGGTGA 1179 0.4563 MGFISILCPCMDTTRLRGPAESPHDPGDGDAADTFDLFFGLHTLQLATNFFSDLNQLGHGGFGPVYKGLMPNGQVVAVKKLSLQSRQGVKEFTNEVKLLLKIQHKNLVTLLGCCIEGPEKMLVYEYLPNKSLDHFLFDKTNSSSLDWTTRFNIVTGVARGLLYLHEEAPERIIHRDIKASNILLDERLNPKISDFGLARLFPGDDTHVQTFRISGTHGYMAPEYAMRGYLSVKTDVFSFGILVLELISGRKNHDVQFGAEKADLLNYAWILYQEGKIMDLVDQTLGKYNPDEAAMCIQLGLLCCQASIVDRPDMNSVHLMLSSDSFTLPIPGKPGIQGRVGRWTTTTTAAFTNTNASSVTKALGGSRASGSSNYLEDFSRNSISTSSFDEGR 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241717g00011 392 SUPERFAMILY Protein kinase-like (PK-like) 36 321 IPR011009 -
Stsc241717g00011 392 FunFam Cysteine-rich receptor-like protein kinase 41 127 327 - -
Stsc241717g00011 392 Pfam Protein tyrosine and serine/threonine kinase 55 318 IPR001245 GO:0004672|GO:0006468
Stsc241717g00011 392 ProSiteProfiles Protein kinase domain profile. 51 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241717g00011 392 ProSitePatterns Serine/Threonine protein kinases active-site signature. 172 184 IPR008271 GO:0004672|GO:0006468
Stsc241717g00011 392 CDD STKc_IRAK 57 321 - -
Stsc241717g00011 392 SMART serkin_6 51 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241717g00011 392 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 36 355 - -
Stsc241717g00011 392 Gene3D Transferase(Phosphotransferase) domain 1 127 327 - -
Stsc241717g00011 392 FunFam Cysteine-rich receptor-like protein kinase 2 27 126 - -
Stsc241717g00011 392 Gene3D Phosphorylase Kinase; domain 1 30 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241717g00011 Stsc-Chr241717 93428 96102 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241717g00011 34 339 Receptor kinase-like Gene Family AT4G11530 52.903 1.43e-110 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc241717g00011 PK_Tyr_Ser-Thr 3.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241717g00011 - - gmx:100790304 615.15