Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241717g00004 ATGTTGAAACTTGCATTAATTTTCCTCTCAGTTCTGTTTCCATTGTTGTTCCTTAGTTCCTCGGGCAACAACATCATCAACACCACCACTTCATCTTCAACAATTTGTAGCACAAAAAGATGCCCCAATGGACCCAACATAAGTTACCCTTTTTGGCTCTCACATGGCTCTCCCCCTCAAGAATACTGTGGCTACCCAGAATTTGGTCTAATTTGCTTAGATAATGGCTACACCATTTTCTCTCCACCACCAGGTTTATACTATTATGTCAAGGACATTGACTATGATAACCATAGCCTTAAGCTTATTGATTTTGACACCACAAACACAACTTGTCCAAGGGCACTTCATGGTTTTCCACTAGGGAACTTACCTCTTTCTCATTCTTCATTGAACTTGAACCTTAGCTTTTACTATAACTGCACTTTTGATTCACACCCTTCTGATGTTCCTGATATAACTTGTTTGAGGCAAGGATCTAAGGAGTCTTTTGTGTTCTTGATGGGGAATGAGAGCAAGGGTTTTGATTGGTCTGAGAGGTGTGAGGAGAATGTTGATGTGACAGTGATGAAGGATCAGATTAGTAATAATGGTGAATATGGTTTGGTGAGTGAGTTTGGTAGGGCTATGAATGAAGGGTTTGTGCTTCAATGGGAAACTGAAGACACCTGCAAAGAGTGTGAGGCTTCTGAGGGATATTGTGGATATAGCAGTACAAAGAAAGAGGTCTTGTGTTTTTGCAAGGATGTAGCAGGGGAAAGCAAGAGCAGGTTATCAAAGTTAATTATAGGTTTAATAGCCGGAGGAATTGGAGTATTGCCAATAACATGCATCATACTTTACATTTTTAGACACAAACTATCACCAATCATGCCAGAAATTTTGAAGATCAGAAATAATGATCAAGATATTGAGGCCTTCATAAAGAATCATGGACCTTTAGCCATAAAAAGGTACACTTATTCTGATATCAAGAAGATGACGAATTCTTTCGAGTCGAAACTCGGGGAAGGTGGTTATGGACAAGTATACAAAGGAATCCTTAACAATGGTGGTCCTGTGGCTGTAAAGCTTCTCAAAGCTTCCAAAGGGAATGGTGAGGAGTTCATCAATGAGGTCTTGAGTATTAGTAAAACATCTCATGTAAACATTGTTGCATTGCTCGGATTCTGTCTCGAAGGTAACAAGAAAAAAGCTCTTATCTATGAATTCATGCCGAATGGATCGCTCGAAAAGTACATTCATAACAATGATCCCAAAACCAATCCACCTTTGAGTTGGGAAAGGCTACACTTTGTTGCGAAAGGGATAGCTCGAGGACTAGAGTACTTACATCGCGGTTGCAACACGAGGATTCTCCATTTCGACATAAAACCAAACAACATCCTCCTAGACGAGAACTTTAGTCCTAAAATCTCAGATTTCGGGCTAGCCAAGTTGTGCTCAAAGACACATAGCATCATCACAATGTTGGATGCCAGAGGGACAATAGGGTACATAGCTCCAGAAGTATGGAACAGACACTTCGGGGGAGTGTCGCATAAATCTGATGTATATAGTTACGGAATGATGATTCTGGAGATGGTGGGAGCGAAGCATAACAACACAAATGGTGAAGTAGGTAGTCATTCTAGTGAGTTGTATTTTCCTCATTGGATATACAAGCATATTGAGGGTGAAAACAGTAGTATGGCATGGCAAGGTGCTAGTATGAGCAATGAGGAGAATGAGATTGTAAGGAAAATGATAATTGTAGGGTTGTGGTGTATCCAAACAATTCCATCAGAAAGACCTCCAATGAGTAGGGTCATTGAAATGCTTGAAGGAAGCATTGATCTATTGCAGAGTCCACCAAAGCCTTTTAGTTTTTCCACAACTCAAACCAAAGTGGAATCTTGTACTACAACTTGTAGCACTGATGATTCATTTTCCCCTGCTGATTAG 1944 0.4028 MLKLALIFLSVLFPLLFLSSSGNNIINTTTSSSTICSTKRCPNGPNISYPFWLSHGSPPQEYCGYPEFGLICLDNGYTIFSPPPGLYYYVKDIDYDNHSLKLIDFDTTNTTCPRALHGFPLGNLPLSHSSLNLNLSFYYNCTFDSHPSDVPDITCLRQGSKESFVFLMGNESKGFDWSERCEENVDVTVMKDQISNNGEYGLVSEFGRAMNEGFVLQWETEDTCKECEASEGYCGYSSTKKEVLCFCKDVAGESKSRLSKLIIGLIAGGIGVLPITCIILYIFRHKLSPIMPEILKIRNNDQDIEAFIKNHGPLAIKRYTYSDIKKMTNSFESKLGEGGYGQVYKGILNNGGPVAVKLLKASKGNGEEFINEVLSISKTSHVNIVALLGFCLEGNKKKALIYEFMPNGSLEKYIHNNDPKTNPPLSWERLHFVAKGIARGLEYLHRGCNTRILHFDIKPNNILLDENFSPKISDFGLAKLCSKTHSIITMLDARGTIGYIAPEVWNRHFGGVSHKSDVYSYGMMILEMVGAKHNNTNGEVGSHSSELYFPHWIYKHIEGENSSMAWQGASMSNEENEIVRKMIIVGLWCIQTIPSERPPMSRVIEMLEGSIDLLQSPPKPFSFSTTQTKVESCTTTCSTDDSFSPAD 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241717g00004 647 Pfam Wall-associated receptor kinase C-terminal 159 249 IPR032872 -
Stsc241717g00004 647 SMART serkin_6 329 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241717g00004 647 Gene3D Transferase(Phosphotransferase) domain 1 405 616 - -
Stsc241717g00004 647 ProSiteProfiles Protein kinase domain profile. 329 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241717g00004 647 PANTHER RUST RESISTANCE KINASE LR10-RELATED 300 627 IPR045874 GO:0004672
Stsc241717g00004 647 Pfam Wall-associated receptor kinase galacturonan-binding 36 104 IPR025287 GO:0030247
Stsc241717g00004 647 Gene3D Phosphorylase Kinase; domain 1 303 404 - -
Stsc241717g00004 647 Pfam Protein kinase domain 332 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241717g00004 647 SUPERFAMILY Protein kinase-like (PK-like) 313 608 IPR011009 -
Stsc241717g00004 647 ProSitePatterns Serine/Threonine protein kinases active-site signature. 452 464 IPR008271 GO:0004672|GO:0006468
Stsc241717g00004 647 ProSitePatterns Protein kinases ATP-binding region signature. 335 357 IPR017441 GO:0005524
Stsc241717g00004 647 FunFam PR5-like receptor kinase 405 618 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241717g00004 Stsc-Chr241717 19574 22156 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241717g00004 36 620 Receptor kinase-like Gene Family AT5G38260 41.639 1.33e-147 440
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc241717g00004 Pkinase 4.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241717g00004 - - ahf:112802243 1138.25