Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241714g00018 ATGGCCGAAGGCGTTGGTGAAGCAAACAAACCGTCACCATCGCCGCCATTGCCACCACCACCACCACCAGAATCCGAGAAGAAGAAAGAACAGAGCCTTCCATTCTACAAGCTCTTCTCATTCGCAGACAAGTACGACATCATGCTCATGATCTGCGGAACCTTAGGCGCCATTGTTCATGGCGCCTCCATGCCCGTCTTCTTCCTCCTCTTCGGTAAAATGGTCAACGGCTTCGGTAAAAACCAAATGGACCTTAACGCCATGATTAATCAAGTCTCAAAGTCTGTTCTTGAGTTTATTTACCTTGGCCTTGTGGTTTGCGCTTCATCTTATGCAGAAATATCATGCTGGATGTACAGTGGGGAGAGGCAAGTGAGCACGCTGAGGAAGAAGTATTTGGAAGCGGTGCTGAAACAAGACGTTGGTTTCTTTGATACGGATGCAAGAACGGGTGATATTGTTTTCAGTATCTCAACGGATACTCTTCTTGTTCAAGATGCCATCAGTGAGAAGGTTGGGAACTTCATACATTATCTTTCAACGTTTCTTGCTGGACTTGTGGTTGGTTTTGTGTCAGCATGGAGGCTAGCACTTCTAAGTGTTGCTGTGATTCCGGGCATCGCTTTTGCCGGCGGCTTGTATGCCTACACTCTCACCGGCCTAACGTCCAAGAGTCGCGAATCCTATTCCAATGCCGGCATCATTGCAGAACAGGCCATTGCGCAAGTTCGAACCGTTTACTCTTATGTCGGCGAGAGCAAGGCGCTGAACTCTTATTCAGATGCAATACAGAACACTCTGAAGCTTGGATACAAAGCAGGAATGGCAAAAGGATTAGGCCTTGGATGCACATATGGGATAGCTTGTATGTCATGGGCACTAGTCTTTTGGTATGCCGGCGTTTTCATCCGAAATGGACAAACTGACGGAGGCAAGGCCTTCACGGCTATTTTCTCGGCCATTGTTGGTGGAATGAGTTTGGGACAATCCTTTTCGAATTTAGGTGCTTTTAGTAAAGGCAAAGCGGCCGGATACAAATTAATGGAGATCATCAAGCAGAAACCAACTATAGTGGAAGATCTTTTAGAAGGAAAGTGCTTGGGCGAGGTTAATGGCAACATTGAATTAAAGAATGTTAGTTTTAGCTATCCTTCGCGGCCGGATGTGATGATCTTTCGCAATTTCTCAATCTTCTTTCCGGCCGGGAAAACTGTGGCGGTTGTAGGTGGCAGTGGATCAGGAAAGAGTACTGTTGTTTCCTTGATTGAAAGGTTCTATGATCCAAATGAAGGTCAAGTTCTGCTTGATAATGTGGACATTAAGACACTGCAACTGAAATGGTTGCGCGATCAAATCGGATTGGTGAATCAAGAACCTGCCCTCTTTGCAACCACCATTCTTGAGAACATACTCTATGGGAAACCTGATGCAACAATTGCTGAAGTGGAGGCAGCAACTTCTGCTGCAAATGCTCATAGCTTTATCACCTTGCTTCCCAATGGCTATAACACTCAGGTGGGAGAGCGAGGAGTGCAATTATCCGGAGGCCAAAAGCAGAGAATTGCAATTGCAAGAGCAATGTTGAAGAATCCAAAGATCCTTCTTTTGGATGAAGCAACTAGTGCTCTAGATGCTGGATCAGAGAGCATTGTTCAAGAGGCACTAGACCGGCTCATGGTCGGAAGAACAACCGTGGTTGTCGCGCATCGTCTCTCGACCATAAGAAATGTTGATACCATTGCTGTGATCCAGCAAGGGCAAGTCGTCGAGACCGGAACACACGAGGAACTCATTGCCAAGGCAGGAACCTATGCATCCCTAATTAGGTTCCAAGAAATGGTCGGAAATAGGGACTTCTCCAACCCCTTAAGGAACTTGAGCTACCAGTACAGCACCGGAGCCGACGGCCGCATAGAAATGATATCTAACGCGGAGACGGAGAAGAAGAATCCGGCCCCAAAAGGATACTTCCTCCGTTTGCTCAAGATGAATGCACCTGAATGGCCTTACTCAATCATGGGAGCAGTTGGTTCTATTCTTTCTGGATTCATTGGCCCAATTTTTGCTATTGTGATGAGCAACATGATTGAGGTTTTTTACTATAGAAACTATGCAACTATGGAGAAGAAGACAAAGGAATATGTATTTATATACATTGGAACCGGGCTTTATGCCGTTGTTGCATACTTGATTCAACATTACTTTTTCAGTATCATGGGTGAGAACCTCACCACAAGGGTTAGAAGAATGATGCTTCAAGTTATATTGAGGAATGAAGTTGGATGGTTCGATGAGGAGGAACACAACTCAAGCTTGGTGGCAGCAAGGCTTGCAACAGATGCAGCTGATGTGAAGGCTGCCATTGCTGAGAGGATTTCAGTCATTCTACAGAACATGACTTCCCTGCTCACTTCTTTCATTGTTGCTTTCATTGTTGAATGGAGGGTTTCACTGCTCATTCTTGCTACCTTCCCTCTCCTTGTCCTTGCCAATTTCGCTCAGCAACTTTCTCTGAAAGGTTTTGCCGGAGACACAGCAAAAGCTCATGCAAAGACAAGTATGATTGCTGGAGAAGGAGTGAGCAACATCAGAACAGTTGCAGCTTTCAATGCACAGAACAAGATGTTATCAGTCTTCTGCCACGAGCTTCGAGTGCCGCAGATGATAAGCCTCCGCCGGAGCCAGACCGCCGGCATCTTGTTCGGCATCTCGCAGCTTGCCCTATATGCCTCTGAGGCTCTCATTCTATGGTACGGTGCACATTTGGTCAGCAAAGGAGTTTCAACCTTCTCAAAGGTCATCAAGGTGTTTGTAGTCCTTGTCATCACGGCGAATTCGGTTGCTGAGACAGTTAGCCTCGCCCCGGAGATAGTCCGGGGCGGGGAGGCGGTCGGCTCTGTTTTCTCCATCCTCGATCGGCACACCAGGATCGATCCAGACGATCCTGATGCTGAGCCGGTCGAGTCAATTCGTGGAGAAATCGAGCTTAGACATGTTGATTTTGCATACCCTTCTAGGCCTGATGTGATGGTGTTCAAGGATTTTAGCCTCAGAATTAGGGCAGGCCAAAGCCAAGCCCTCGTCGGAGCGAGTGGATCGGGGAAGAGTTCGGTCATTGCGCTTATCGAGAGATTCTACGATCCCATAGCCGGGAAAGTAATGGTGGATGGAAAAGACATAAGGAAACTCAACTTGAAGTCCTTAAGACTCAAGATTGGTTTGGTCCAACAAGAGCCAGCATTGTTTGCAGCTTCCATATTTGATAACATTGCTTATGGAAAGGAAGGAGCCACCGAATCCGAGGTGATCGAGGCGGCTAGGGCCGCCAACGTGCACGCCTTTGTTAGCGGCCTGCCCGAGGGATACAAGACACCCGTCGGCGAACGGGGCGTGCAGCTCTCGGGGGGCCAGAAACAAAGGATTGCAATTGCTAGGGCTGTCCTTAAGGACCCTACAATATTGCTTCTTGATGAAGCAACAAGTGCACTTGATGCTGAGTCAGAGTGTGTCCTACAAGAGGCATTGGAGAGGCTCATGAGAGGGAGGACCACGGTGCTCATCGCGCACCGCTTGTCCACCATAAGAGGGGTTGATTGCATTGGTGTGGTCCAAGATGGGCGCATTGTGGAACAAGGTAGCCATTCTGAGCTTATAAGCAGGCCTGAGGGTGCATATTCTAGACTCTTGCAACTACAACACCATCACATTTAA 3711 0.4767 MAEGVGEANKPSPSPPLPPPPPPESEKKKEQSLPFYKLFSFADKYDIMLMICGTLGAIVHGASMPVFFLLFGKMVNGFGKNQMDLNAMINQVSKSVLEFIYLGLVVCASSYAEISCWMYSGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDIVFSISTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSVAVIPGIAFAGGLYAYTLTGLTSKSRESYSNAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPTIVEDLLEGKCLGEVNGNIELKNVSFSYPSRPDVMIFRNFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNEGQVLLDNVDIKTLQLKWLRDQIGLVNQEPALFATTILENILYGKPDATIAEVEAATSAANAHSFITLLPNGYNTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTIAVIQQGQVVETGTHEELIAKAGTYASLIRFQEMVGNRDFSNPLRNLSYQYSTGADGRIEMISNAETEKKNPAPKGYFLRLLKMNAPEWPYSIMGAVGSILSGFIGPIFAIVMSNMIEVFYYRNYATMEKKTKEYVFIYIGTGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLQVILRNEVGWFDEEEHNSSLVAARLATDAADVKAAIAERISVILQNMTSLLTSFIVAFIVEWRVSLLILATFPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKMLSVFCHELRVPQMISLRRSQTAGILFGISQLALYASEALILWYGAHLVSKGVSTFSKVIKVFVVLVITANSVAETVSLAPEIVRGGEAVGSVFSILDRHTRIDPDDPDAEPVESIRGEIELRHVDFAYPSRPDVMVFKDFSLRIRAGQSQALVGASGSGKSSVIALIERFYDPIAGKVMVDGKDIRKLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATESEVIEAARAANVHAFVSGLPEGYKTPVGERGVQLSGGQKQRIAIARAVLKDPTILLLDEATSALDAESECVLQEALERLMRGRTTVLIAHRLSTIRGVDCIGVVQDGRIVEQGSHSELISRPEGAYSRLLQLQHHHI 1236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241714g00018 1236 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 53 339 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc241714g00018 1236 FunFam ABC transporter B family member 1 651 960 - -
Stsc241714g00018 1236 ProSitePatterns ABC transporters family signature. 513 527 IPR017871 GO:0005524|GO:0016887
Stsc241714g00018 1236 Pfam ABC transporter 393 541 IPR003439 GO:0005524
Stsc241714g00018 1236 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 996 1230 IPR003439 GO:0005524
Stsc241714g00018 1236 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 672 959 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc241714g00018 1236 SUPERFAMILY ABC transporter transmembrane region 651 973 IPR036640 GO:0005524|GO:0016020
Stsc241714g00018 1236 CDD ABC_MTABC3_MDL1_MDL2 994 1232 - -
Stsc241714g00018 1236 CDD ABC_6TM_Pgp_ABCB1_D2_like 661 977 - -
Stsc241714g00018 1236 SMART AAA_5 401 587 IPR003593 GO:0016887
Stsc241714g00018 1236 SMART AAA_5 1021 1207 IPR003593 GO:0016887
Stsc241714g00018 1236 FunFam ABC transporter B family member 19 984 1233 - -
Stsc241714g00018 1236 FunFam ABC transporter B family member 1 37 367 - -
Stsc241714g00018 1236 FunFam ABC transporter B family member 19 961 983 - -
Stsc241714g00018 1236 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 983 1232 IPR027417 -
Stsc241714g00018 1236 FunFam ABC transporter B family member 19 364 612 - -
Stsc241714g00018 1236 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 368 611 IPR027417 -
Stsc241714g00018 1236 Gene3D - 364 612 IPR027417 -
Stsc241714g00018 1236 ProSitePatterns ABC transporters family signature. 1133 1147 IPR017871 GO:0005524|GO:0016887
Stsc241714g00018 1236 PANTHER ABC TRANSPORTER B FAMILY 24 684 IPR039421 -
Stsc241714g00018 1236 Pfam ABC transporter transmembrane region 50 324 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc241714g00018 1236 Pfam ABC transporter transmembrane region 672 943 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc241714g00018 1236 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 374 610 IPR003439 GO:0005524
Stsc241714g00018 1236 MobiDBLite consensus disorder prediction 1 31 - -
Stsc241714g00018 1236 CDD ABC_MTABC3_MDL1_MDL2 374 611 - -
Stsc241714g00018 1236 Gene3D - 984 1235 IPR027417 -
Stsc241714g00018 1236 SUPERFAMILY ABC transporter transmembrane region 37 359 IPR036640 GO:0005524|GO:0016020
Stsc241714g00018 1236 Pfam ABC transporter 1013 1161 IPR003439 GO:0005524
Stsc241714g00018 1236 CDD ABC_6TM_Pgp_ABCB1_D1_like 50 347 - -
Stsc241714g00018 1236 Gene3D ABC transporter type 1, transmembrane domain 37 963 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241714g00018 Stsc-Chr241714 119388 127556 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241714g00018 18 1233 Calmodulin-binding Proteins AT2G36910 53.302 0.0 1344
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241714g00018 K05658 - gmx:100797124 2180.6