Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241714g00011 ATGGGTGCTGGTGCTGGTGCAGGTAGTCCTTGGATGAAGCGATCCATGTCCTTCTCAGGCATAGACACCGCCAAGAACTGCGTCGGCGCTGACGACTTGGTGCTTCACGCTGACGACGAGCTTTCCGACGACGGATCTCAAATCGGGGAGAAGAAGAAGAGGCTGAGCATGGAGCAGGTAAAGGCGCTGGAGAAGAGTTTCGAGGCCGGGAACAAGCTCGACCCCGAGCGCAAAATGCAGCTGGCCAAAGCCCTTGGGCTTCAGCCGCGGCAGATCGCCATTTGGTTTCAGAACCGCCGTGCAAGGTGGAAGACCAAGCAGCTCGAGAAGGAATATGAGGTCCTCAAGAAGCAATTTGATGCCGTTAAGGCCGACAACGACACCCTCAAAACGCAGAATCAGAAGCTCCACGCCGAGCTACAAGCTCTAAAGGGTAATAGGGAATGGTGTGAAACTGGAACAGTGATTACCCTAAAGAAAGAAAATGAGGGTTCTTGGAGCAACAATGGAAGTGATAACAGCTCAGATATGAATTTGGATCTTTCAAGAACACCAGTGATGAATAATAGTCCAGTGTCTTCTTCTCACCACCATCATCATCAGAATAATCAGAATAATAATAATAATAATGATAATAATAATAACAATAGTAAAAGCCTTGTTCTACCAAATTCTCTTAAGCCAACAAGCATAACACAGCTCCTTCAATGTTCATCTTCCTCAAGATCAGATCTTCAAGATGATCAAGGCTTTTGCAACATGTTCCACAACATTGATGAGCAGCAGCATAATTTTTGGTCATGGCCTCCTCCTACTGAGAATAATAATCATCACCACCATTTTCATTGA 849 0.4617 MGAGAGAGSPWMKRSMSFSGIDTAKNCVGADDLVLHADDELSDDGSQIGEKKKRLSMEQVKALEKSFEAGNKLDPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLEKEYEVLKKQFDAVKADNDTLKTQNQKLHAELQALKGNREWCETGTVITLKKENEGSWSNNGSDNSSDMNLDLSRTPVMNNSPVSSSHHHHHQNNQNNNNNNDNNNNNSKSLVLPNSLKPTSITQLLQCSSSSRSDLQDDQGFCNMFHNIDEQQHNFWSWPPPTENNNHHHHFH 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241714g00011 282 PRINTS Lambda-repressor HTH signature 77 86 IPR000047 GO:0003677
Stsc241714g00011 282 PRINTS Lambda-repressor HTH signature 86 102 IPR000047 GO:0003677
Stsc241714g00011 282 Coils Coil 98 146 - -
Stsc241714g00011 282 CDD homeodomain 51 107 IPR001356 GO:0003677
Stsc241714g00011 282 ProSitePatterns 'Homeobox' domain signature. 81 104 IPR017970 GO:0000981|GO:0006355
Stsc241714g00011 282 ProSiteProfiles 'Homeobox' domain profile. 46 106 IPR001356 GO:0003677
Stsc241714g00011 282 FunFam Homeobox-leucine zipper protein ATHB-13 43 110 - -
Stsc241714g00011 282 MobiDBLite consensus disorder prediction 161 224 - -
Stsc241714g00011 282 Gene3D - 43 119 - -
Stsc241714g00011 282 SMART HOX_1 49 110 IPR001356 GO:0003677
Stsc241714g00011 282 Pfam Homeodomain 51 104 IPR001356 GO:0003677
Stsc241714g00011 282 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 40 267 IPR045224 GO:0003700
Stsc241714g00011 282 SUPERFAMILY Homeodomain-like 42 108 IPR009057 -
Stsc241714g00011 282 Pfam Homeobox associated leucine zipper 106 145 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241714g00011 Stsc-Chr241714 67285 70007 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241714g00011 5 269 Homeobox Transcription Factor Family AT5G15150 48.410 1.13e-68 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Stsc241714g00011 Homeodomain 5.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241714g00011 K09338 - gmx:100790803 296.975