Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241714g00005 ATGGCGGCTTGCATCACCTTCATGGTGTCGCAAGACGGAACGGGCGACTTCCAAACCGTGCAGGACGCCATCGACGCCGTCCCTCTCAGCAACACTCGCCGGACGGTGATTCGCGTGTCGCCGGGAATCTACCGTCAGCCTCTTTATGTTCCTAAGACGAAGAATTTCATCACTCTTGCTGGCCTCAATCCCGAGGATACTATTCTTACTTGGAACAACACTGCCTCCAAGATCGATCACCATCAACCTGCTAGGGTTATAGGGACTGGTACATTTGGTTGTGGAACTGTAATTGTAGAAGGGGAAGACTTCATTGCTGAGAATATTACTTTTGAGAATTCTTCCCCTCAGGGTTCAGGGCAAGCAGTGGCAATTAGAGTAACAGCAGATCGATGTGCCTTCTACAATTGCAGGTTCCTTGGATGGCAGGACACGCTGTACTTACATTATGGAAAAAATTATTTGAAAGATTGCTATATTGAAGGTAGTGTCGACTTTATCTTTGGCAATAGCACTGCTCTTCTGGAACACTGTCATATCCACTGCAAGTCTGAAGGGTTCATAACTGCACAGAGCCGAAAGTCTTCACTGGAAACAACTGGCTATGTATTCTTGAGATGTGTTATCACAGGTAATGGGGAAAAATCATATGCATGTCTTGGACGGCCATGGGGCCCTTTCGGAAGGGTGGTCTTTGCATACACTTACATGGATCAATGTATAAGGCATGTTGGTTGGGATAACTGGGGAAAAGTTGAAAACGAGAGAAGTGCTTGCTTTTATGAATACAGGTGTTTTGGACCTGGTTGCTGTCCATCGAGACGGGTAACGTGGTGTAGAGAATTGTTGGATGAAGAAGCAGAGCAGTTCCTCATGCATCATTTCATCGACCCGGATCCCGAAAGGCCTTGGCTTGCTCAAAGAATGGCCTTGAAGATTCCATATACAGCATAG 954 0.4665 MAACITFMVSQDGTGDFQTVQDAIDAVPLSNTRRTVIRVSPGIYRQPLYVPKTKNFITLAGLNPEDTILTWNNTASKIDHHQPARVIGTGTFGCGTVIVEGEDFIAENITFENSSPQGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKNYLKDCYIEGSVDFIFGNSTALLEHCHIHCKSEGFITAQSRKSSLETTGYVFLRCVITGNGEKSYACLGRPWGPFGRVVFAYTYMDQCIRHVGWDNWGKVENERSACFYEYRCFGPGCCPSRRVTWCRELLDEEAEQFLMHHFIDPDPERPWLAQRMALKIPYTA 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241714g00005 317 Gene3D - 4 311 IPR012334 -
Stsc241714g00005 317 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 6 300 - -
Stsc241714g00005 317 Pfam Pectinesterase 8 297 IPR000070 GO:0030599|GO:0042545
Stsc241714g00005 317 FunFam Pectinesterase 3 310 - -
Stsc241714g00005 317 ProSitePatterns Pectinesterase signature 2. 160 169 IPR033131 -
Stsc241714g00005 317 SUPERFAMILY Pectin lyase-like 3 303 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241714g00005 Stsc-Chr241714 31896 35276 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241714g00005 9 310 Carbohydrate Esterase AT5G47500 38.782 1.47e-69 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241714g00005 K01051 - gmx:100795636 614.379