Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241714g00002 ATGGAAATGATGACAAAGAAAGAAGACAACATGAAGAGGAGTTGGATGTCAATGCCACAAAGCGAGTTCCAAGTAGTAGCAAGGGGTAACAAGAGGAGAAGGAGAGAGCTTACAGCAGTTGCACTAACAAATGAAGAAAACCAAAGTAAGAACCAAACATTGCAGCAACAGCAAGTTGATCAAAGTTCAGCTACCAACAGTACAAAGAGAAGTTCAAGATTCAGGGGTGTCAGCAGACATAGATGGACGGGTCGATACGAGGCTCACTTATGGGACAAGCTCTCTTGGAACATAACTCAGAGGAAGAAAGGGAAGCAAGTTTACCTTGGGGCATACGACGAAGAAGAATCCGCAGCTAGAGCATATGATTTAGCTGCACTTAAGTACTGGGGAACATCGACTTTCACCAATTTTCCGATCTCAGACTATGAGAAAGAGATTGAAATAATGCAGACTATGACAAAAGAGGAGTACTTAGCTACTTTAAGGAGAAAGAGCAGCGGCTTCTCAAGGGGTGTATCAAAGTATAGGGGAGTTGCAAGACACCACCACAATGGTAGATGGGAAGCAAGGATTGGAAGGGTTTTTGGAAACAAATATCTCTACCTAGGCACCTACAGCACCCAAGAAGAAGCTGCTCGCGCTTATGACATAGCAGCCATTGAGTACAGAGGGATCCATGCTGTAACCAACTTTGATTTGAGTTCTTACATACGGTGGTTAAAGCCTTCAGAGGGGAACATCTCAGAATCAAAACTTGAATCAGAGGTAACACCGGAGTCTCAGACAGCAGTATCTGAAACTCATTCACCAACAGAGGGGTCTAAATCCTTGGCCATTCATTCGTTCAGTTCAGATTATCTTAATTGCCCTCAAAATCATGAAATCTTTGAAAACACAACATTCCAATTCTCCAGCAATAAGTCATCTTCTCCAACTGCGCTCGGCCTCCTCCTCCGGTCATCGATATTTAGAGAATTGGTTGAAAAGAATTTGAACATGTCTGGGGATGAAACTGATGGGGAAGACACGAAGGATCAGCAGCCACAGATAACTTGTGATGATGAATTGGGTGGGATCTTTTACGATGGAATTAATGATATCCCTTATCTGTGA 1116 0.431 MEMMTKKEDNMKRSWMSMPQSEFQVVARGNKRRRRELTAVALTNEENQSKNQTLQQQQVDQSSATNSTKRSSRFRGVSRHRWTGRYEAHLWDKLSWNITQRKKGKQVYLGAYDEEESAARAYDLAALKYWGTSTFTNFPISDYEKEIEIMQTMTKEEYLATLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGIHAVTNFDLSSYIRWLKPSEGNISESKLESEVTPESQTAVSETHSPTEGSKSLAIHSFSSDYLNCPQNHEIFENTTFQFSSNKSSSPTALGLLLRSSIFRELVEKNLNMSGDETDGEDTKDQQPQITCDDELGGIFYDGINDIPYL 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241714g00002 371 MobiDBLite consensus disorder prediction 41 72 - -
Stsc241714g00002 371 CDD AP2 72 141 IPR001471 GO:0003700|GO:0006355
Stsc241714g00002 371 MobiDBLite consensus disorder prediction 249 275 - -
Stsc241714g00002 371 ProSiteProfiles AP2/ERF domain profile. 175 233 IPR001471 GO:0003700|GO:0006355
Stsc241714g00002 371 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 47 298 - -
Stsc241714g00002 371 CDD AP2 174 235 IPR001471 GO:0003700|GO:0006355
Stsc241714g00002 371 PRINTS Ethylene responsive element binding protein signature 215 235 IPR001471 GO:0003700|GO:0006355
Stsc241714g00002 371 PRINTS Ethylene responsive element binding protein signature 74 85 IPR001471 GO:0003700|GO:0006355
Stsc241714g00002 371 MobiDBLite consensus disorder prediction 41 76 - -
Stsc241714g00002 371 FunFam AP2-like ethylene-responsive transcription factor 72 141 - -
Stsc241714g00002 371 FunFam AP2-like ethylene-responsive transcription factor 174 235 - -
Stsc241714g00002 371 SUPERFAMILY DNA-binding domain 72 141 IPR016177 GO:0003677
Stsc241714g00002 371 Pfam AP2 domain 72 131 IPR001471 GO:0003700|GO:0006355
Stsc241714g00002 371 Pfam AP2 domain 174 225 IPR001471 GO:0003700|GO:0006355
Stsc241714g00002 371 SUPERFAMILY DNA-binding domain 174 235 IPR016177 GO:0003677
Stsc241714g00002 371 ProSiteProfiles AP2/ERF domain profile. 73 139 IPR001471 GO:0003700|GO:0006355
Stsc241714g00002 371 SMART rav1_2 73 145 IPR001471 GO:0003700|GO:0006355
Stsc241714g00002 371 SMART rav1_2 175 239 IPR001471 GO:0003700|GO:0006355
Stsc241714g00002 371 Gene3D AP2/ERF domain 72 141 IPR036955 GO:0003700|GO:0006355
Stsc241714g00002 371 Gene3D AP2/ERF domain 174 235 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241714g00002 Stsc-Chr241714 2822 5230 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241714g00002 69 278 AP2-EREBP Transcription Factor Family AT5G57390 59.722 1.15e-85 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Stsc241714g00002 AP2 2.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241714g00002 - - ahf:112716370 673.7