Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241713g00018 ATGATTTCACTTTCACAATTGGCATTTGGCAATAATGAAACAGCATCTTGTTTGGATACTAGCTCTCTTGATCAAACCTCCAAGGTTGCTGCTACCACCACCATCACTTACAACACCAGTAGTGCTGATCCTTATTCTCCTCCTTTTCTCACACAAATAAACCACAGCCCTGAATCCTCCTCTGTCGTTGAAAACGGTGAGCAAGTCACTCAGAACATGGACAAGGACAACAAGAGGAAAACTACTTCTAAAGCCTCTTCCTTCAACAACAATAATAAGGAGCTCTCATCAGCAGGAGGTAGAGAAGGGAGAAGTAGCAAGAAACAAAAGAAGGGTAATAATGGTGGGAGTGGGGTGATGAAAAAAGGAGAGAAGGAAAAAGAAGAGGCTCCAACAGCAACAACTGGGTATATCCACGTTAGAGCAAGAAGGGGCCAAGCAACTGATAGCCACAGCCTTGCTGAAAGGGTGAGAAGGGAGAAGATAAGTGAGAGGATGAAGATGTTGCAACGACTTGTGCCAGGCTGTGATAAGGTAACCGGAAAGGCTCTTGTGTTGGACGAGATCATCAATTATGTTCAGTCCCTACAGAATCAAGTAGAGTTCTTGTCAATGAAGCTTGCTTCACTCAGCCCCTTCTTCTTTGACTTTGCATTGGACATAGATAGTAATGCCCACTTGGTTAGGCCACTGGATCAGAATGTTGAGAATCAGAAGATAACAAACACAGCATCATCAGTACCACAATGCAGCGGCACAAACCAGGCTACAACCTTTGCTGATACAACCACCATGACCACCACCACCACCAACACCACCTTCCCCGGTGCTGATAATAATAATAATAATAACAGTGACTATCTATTGGATTATTCATCATCACCAGTTTTTGAACAAGGACAGAGGACATCAAATGTCTTCTCTGAGTATACCGGTGGTCAATTCTGGGAAGTAGAAGAGCAAAGACAAAAGCTTCTTCTTCTTCATTCATATGGACTTGGCAGCAACAACTTAGGACCCTTGAATTAA 1029 0.4334 MISLSQLAFGNNETASCLDTSSLDQTSKVAATTTITYNTSSADPYSPPFLTQINHSPESSSVVENGEQVTQNMDKDNKRKTTSKASSFNNNNKELSSAGGREGRSSKKQKKGNNGGSGVMKKGEKEKEEAPTATTGYIHVRARRGQATDSHSLAERVRREKISERMKMLQRLVPGCDKVTGKALVLDEIINYVQSLQNQVEFLSMKLASLSPFFFDFALDIDSNAHLVRPLDQNVENQKITNTASSVPQCSGTNQATTFADTTTMTTTTTNTTFPGADNNNNNNSDYLLDYSSSPVFEQGQRTSNVFSEYTGGQFWEVEEQRQKLLLLHSYGLGSNNLGPLN 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241713g00018 342 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 48 260 IPR024097 GO:0006355
Stsc241713g00018 342 Pfam Helix-loop-helix DNA-binding domain 150 197 IPR011598 GO:0046983
Stsc241713g00018 342 MobiDBLite consensus disorder prediction 83 99 - -
Stsc241713g00018 342 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 146 196 IPR011598 GO:0046983
Stsc241713g00018 342 FunFam Basic helix-loop-helix transcription factor 143 215 - -
Stsc241713g00018 342 SMART finulus 152 202 IPR011598 GO:0046983
Stsc241713g00018 342 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 144 212 IPR036638 GO:0046983
Stsc241713g00018 342 MobiDBLite consensus disorder prediction 37 153 - -
Stsc241713g00018 342 CDD bHLH_AtBPE_like 136 221 - -
Stsc241713g00018 342 Gene3D - 143 212 IPR036638 GO:0046983
Stsc241713g00018 342 MobiDBLite consensus disorder prediction 37 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241713g00018 Stsc-Chr241713 127642 130556 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241713g00018 77 222 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 64.384 1.04e-54 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc241713g00018 HLH 1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241713g00018 - - ahf:112732895 411.764