Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241713g00007 ATGTATTTGTTCAGCAGCAAGGAAGCCAAGTATCGAAATGGTAGCCGCATGAACAGAACAACCACCTCTGGGTATTGGAAGGCAACAGGATCAGACAAAAGAATCACTTCATCATCTAATAATAATGAGGATAATAACAATGGCATTCTTGGAGTTAGAAAAACCCTGGTTTTTTACCAAGGGAAATCTCCCAATGGCACTAGAACTCACTGGATCATGCATGAATATCGCCTAGCTAGCACTAATGGTTACGACATAGGAGACTGGGTTCTGTGTCGCTTATCGGTGAAGAAAAGGAGTGCAGATCAGAATCATCATCAGCAAAAGAGTAGTAGTGGTGTTCCAGCAAGCAGAGTGTTGGATTTTATGATGATAAGCAATAATAATAATAAGAAGAAAGCACATTCTTCCTCCTCTTCCTCTTCTTCCACTTCAAGTAATTACATCATGGAAGTCTCTTCTTCTTCTGAGTATCAACAACACAACACTGCATGTCCTCCTCCTTCTCATGGTTTTCCTCATTATTGA 528 0.4034 MYLFSSKEAKYRNGSRMNRTTTSGYWKATGSDKRITSSSNNNEDNNNGILGVRKTLVFYQGKSPNGTRTHWIMHEYRLASTNGYDIGDWVLCRLSVKKRSADQNHHQQKSSSGVPASRVLDFMMISNNNNKKKAHSSSSSSSSTSSNYIMEVSSSSEYQQHNTACPPPSHGFPHY 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241713g00007 175 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 2 155 - -
Stsc241713g00007 175 ProSiteProfiles NAC domain profile. 1 97 IPR003441 GO:0003677|GO:0006355
Stsc241713g00007 175 MobiDBLite consensus disorder prediction 128 175 - -
Stsc241713g00007 175 Gene3D NAC domain 1 103 IPR036093 GO:0003677|GO:0006355
Stsc241713g00007 175 Pfam No apical meristem (NAM) protein 1 78 IPR003441 GO:0003677|GO:0006355
Stsc241713g00007 175 MobiDBLite consensus disorder prediction 128 166 - -
Stsc241713g00007 175 SUPERFAMILY NAC domain 2 97 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241713g00007 Stsc-Chr241713 53626 54493 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241713g00007 2 104 NAC Transcription Factor Family AT5G13180 55.660 1.59e-35 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc241713g00007 NAM 4.1e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241713g00007 - - adu:107480040 174.866