Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241712g00023 ATGACACAGCAAGAGTTTAAAATCAAAGAACCTCGTCTTGTGTCTAGAAAATTCTTGGCTAGACCTCAACATGAAGGTGTTGGAGCTGTTGTTAGAAGAAGCATTGGAAGATTTGAGCTCAAGTACTTTGATCCTTTCCTTGTCTTGGATGAATTCTCAGTCACTGCTCCTGCTGGTTTTCCAGATCATCCACACAGAGGCTTTGAGACTGTCACATACATGTTACAGGGAGCTGTAACACATGAAGATTTTGAAGGGCATAAAGGAACAATTGAAGCTGGTGATTTGCAATGGATGACTGCAGGGAGAGGAATAGTTCATTCAGAAATGCCTGCATCTCAAGGAACTCAAAAGGGTCTCCAATTATGGATCAATCTTGCTTCACAAAACAAAATGATTGAACCAAAGTATCAAGAAATATTAAGCAAGGACATAGGAGAAGCTATGAAAGATGGCGTGAAGGTTAGGGTAATAGCAGGGGAAGCACTTGGTATAAAGTCTCCAATCTACACAAGGACACCAACAATGTACTTGGACTTCATTCTCAAACCTGGCTCACACTTGCAACAACCTATACCTAAATCTTGGAATGCTTTTGTGTATGTTTTGGAAGGAGAGGGTATTTTCGGAAACCAAAAGTCTCAACCTATAAGTTCACACCACATTCTTCTTCTTGGCAGTGGTGATGGATTAGAGGCATGGAACAAATCTTCTAAGCAACTTAGGTTCATTCTTGTTGGAGGTGAACCACTAGGTGAACCTGTGGTTCAGTTTGGGCCATTTGTTATGAACACTCAAGAAGAAATTGACCAAACCATTGATGACTTTGAGAACTATGCTAATGGATTTGAGAAAGCAAGGCAATGGAGATCTCAAAGTGCACTTAGCCTTGACTATTGA 900 0.4067 MTQQEFKIKEPRLVSRKFLARPQHEGVGAVVRRSIGRFELKYFDPFLVLDEFSVTAPAGFPDHPHRGFETVTYMLQGAVTHEDFEGHKGTIEAGDLQWMTAGRGIVHSEMPASQGTQKGLQLWINLASQNKMIEPKYQEILSKDIGEAMKDGVKVRVIAGEALGIKSPIYTRTPTMYLDFILKPGSHLQQPIPKSWNAFVYVLEGEGIFGNQKSQPISSHHILLLGSGDGLEAWNKSSKQLRFILVGGEPLGEPVVQFGPFVMNTQEEIDQTIDDFENYANGFEKARQWRSQSALSLDY 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241712g00023 299 Gene3D Jelly Rolls 146 251 IPR014710 -
Stsc241712g00023 299 CDD cupin_pirin_C 174 250 - -
Stsc241712g00023 299 Pfam Pirin 31 124 IPR003829 -
Stsc241712g00023 299 CDD cupin_pirin_N 29 126 - -
Stsc241712g00023 299 SUPERFAMILY RmlC-like cupins 12 291 IPR011051 -
Stsc241712g00023 299 Pfam Pirin C-terminal cupin domain 177 280 IPR008778 -
Stsc241712g00023 299 Gene3D Jelly Rolls 25 277 IPR014710 -
Stsc241712g00023 299 FunFam pirin 25 163 - -
Stsc241712g00023 299 PANTHER PIRIN-RELATED 6 293 IPR012093 -
Stsc241712g00023 299 PIRSF Pirin 10 290 IPR012093 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241712g00023 Stsc-Chr241712 136034 139675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241712g00023 11 287 Calmodulin-binding Proteins AT3G59220 60.573 2.43e-127 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241712g00023 K06911 - gmx:100790637 558.525