Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241712g00019 ATGGATAAGCATGTAATCGATGGCCGCACGGTCGAAGCAAAGAAGGCTGTTCCCCGAGACGATCAGCAAACTATAAATAGGCAGTCTGGTAGCATGCAGGGATCTCCGAGTCCTGGTCGCACGAAGAAAATTTTTGTTGGAGGTTTACCATCAACGATCACGGAAAGTGATTTCAAGAAGTATTTTGATCAGTTTGGTACAATTACTGATGTTGTAGTGATGTATGATCACAATACTCAGAGGCCAAGAGGATTTGGCTTCATCACTTATGATTTGGAAGAAGCTGTCGACAGAGTTCTTTATAAATCATTTCATGAACTCAATGGGAAGTTGGTTGAGGTCAAGAGGGCAGTTCCGAAAGATCTTTCTCCTGGACCCAATCGGAGCCCATTGATAGGATATAACTACGGTTTGAATAGGACAAGTAGCTACCTAAACAGTTATGCTCAGGGTTTTAATATTAATCCGATAGGAGGCTATGGCATGAGGATGGATGGTAGATTTAGTCCACTTACTAGTGGTAGAAGCAGTTTTACCCCATTTGGATCTAGCGGTTATGGAATGGGAGTGAATTTGGAATCACCATTGAGTCCAAACTATGGAGGAACTTCCAATTATGGGGGCAGTATAGGGTACGGTCGAATATTTAGTCCTTTCTATAGTGGCAATTCAAGCAGGTACACAACTCCAATTGGCTTTAGCGGGGGCAATGCGAGAAGCGACACTCTTACGAACTCAACTTCTAGGAATGTCTGGGGAAATGGGGGCCTGAATACTGCAACTAATAACCCCGTCAGCCCCGGTGCTTACTTGGGATCTGGAAGTGGGGCTTTCGGTGTTTCACTTGGAAATAGTGGCACCAATTGGGGTCCATCAGTTCCAACGCAAGGTGGAGGTGCTGCTTCCGGCTATGCTACTTGGAGCAATGTTTATGGCAGTGGAGATAGTAGCACAGGATTAGGAGGAGGAGGAGGAGGAGGGTATGGAAGGAACGGCGGCACAAATGTGACCCAGTCCTCTACATTCGCTGCACCAAACAGTGTTTATGATGGACCATATGGGGACTCATACCGCAGTGGTTCTGTTTACAATGACTCTACTTGGCGATCCGCTTCTTCTGAGGTAGATGGTTCTGGTGCATTCAGTTATGGACTTGGTGGCATTGTTTCAGATGATCCAGTGAAGAGTTCTGAGGGTTTTATTGGGAACTACAATGTAACAAGTAGACAATCTAATAGAGGAATTGCTGCTTAG 1254 0.4537 MDKHVIDGRTVEAKKAVPRDDQQTINRQSGSMQGSPSPGRTKKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDLEEAVDRVLYKSFHELNGKLVEVKRAVPKDLSPGPNRSPLIGYNYGLNRTSSYLNSYAQGFNINPIGGYGMRMDGRFSPLTSGRSSFTPFGSSGYGMGVNLESPLSPNYGGTSNYGGSIGYGRIFSPFYSGNSSRYTTPIGFSGGNARSDTLTNSTSRNVWGNGGLNTATNNPVSPGAYLGSGSGAFGVSLGNSGTNWGPSVPTQGGGAASGYATWSNVYGSGDSSTGLGGGGGGGYGRNGGTNVTQSSTFAAPNSVYDGPYGDSYRSGSVYNDSTWRSASSEVDGSGAFSYGLGGIVSDDPVKSSEGFIGNYNVTSRQSNRGIAA 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241712g00019 417 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 413 - -
Stsc241712g00019 417 MobiDBLite consensus disorder prediction 1 21 - -
Stsc241712g00019 417 CDD RRM2_Hrp1p 43 120 - -
Stsc241712g00019 417 Gene3D - 12 130 IPR012677 -
Stsc241712g00019 417 SUPERFAMILY RNA-binding domain, RBD 21 129 IPR035979 GO:0003676
Stsc241712g00019 417 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 109 IPR000504 GO:0003723
Stsc241712g00019 417 FunFam Heterogeneous nuclear ribonucleoprotein 1 39 126 - -
Stsc241712g00019 417 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 119 IPR000504 GO:0003723
Stsc241712g00019 417 MobiDBLite consensus disorder prediction 22 38 - -
Stsc241712g00019 417 SMART rrm1_1 43 115 IPR000504 GO:0003723
Stsc241712g00019 417 MobiDBLite consensus disorder prediction 1 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241712g00019 Stsc-Chr241712 113935 116876 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241712g00019 13 105 Eukaryotic Initiation Factors Gene Family AT2G36660 31.579 5.96e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241712g00019 K14411 - gmx:100788515 681.019