Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241712g00018 ATGTTCAACTTGAAGAAGAAGAATAACAATGGTGTAGTTATTATAAGATGCAATAGAAATTCCACCAATATTGTTGTGATAAGGCTTGAGAATTTGAACCTTAGTGGTACAATTGATGGTGATTCTCTATGCAAGCTCCAAAAATTAAGGGTTCTTAGCTTAGCCAACAACAACCTCAAAGGGGAAATCCCACACTCAATTTTGCATTGCACAAGGTTGGTGTATCTAAATCTTTCAAGAAATCAATTGAGTGGGAATGTTCCTAAATTGAAATTTCTCCAAAAATTGGACATATCCAACAACAATTTCAATGGTGTGATGATCTCTACAAATTATGTGACACCAAATATTAAAGATTGGAGGAAGGGTAGTATTGTAAATTCATCGTCACCAAAGCCAGGTGTTATTTCAAGCAATGATACCTTATCAAAAAATGGTAAAGAGGAAAAATCATCTATGATGAAATTCTTAATACCACTTATCATAGGGGCTGTAGTTCTTGTTGCATCACTTATCTTTGCTGCCAAGAAATTACCCAAGTTATGTAGAGAGGGAGTAATTAAGGTACTAAGAAGCCATCAAATTTCTCCATCACTAAAGTCCATAACAAGTGATTTGGAGAAAGAAAATAATGTTAGTAAGAAAAATAAAAACAACAAGAAGAAGGGTAGTTTAGAAGATCCATCATCACCACCATCACTAGGGCTTGTTTTCTTTGTTGAGAAAGATGAGAGGTTCACCATGGAGGACTTGCTTCGAGCCGCGGCGGATTTGAGGAGCGAGAGCTTTAGTAGCAGTCTATACAAGGTGAATATTGTGGAGAATGGTGCTCACTATGCTGTGAAGAGGTTAAAGAATGTTCAAGTTTCTAGTGAGGATGAGTTTGGAGAAACTTTGAAGAAGATAAGCAAGTTGAAGCATCCAAATATTCTTCCACTTGTTGGTTACCGTTCTACTAATGAAGAAAAGCTTGTCATCTACAAATATCAAAGCAATGGAAGCCTCCTCAATCTCTTGAATGATTACATAGCAGGTAGAAAACATTTCCCATGGAAATTGCGTCTCTCTATAGCATGTGGAATTGCAAGGGGTATGGCCTTCATATATAGCAAGAAGTTGAATAACAATTACAAAGGGGAAGAAGATGATTCCGTTATTCCTCATGGGAACCTTAAGCCATCAAACATACTCTTCAATGAAAAAAATGAACCACTCATAAGTGAACATGGCCTAACAAAATTCATGGATCCGAATAGGTCAGGTTTCCTCCTTTCGTCTCAGGGATACGCCGCGCCGGAGAAATGTCTTTCAGAAAAAGCAGACGTCTATAGCTTTGGCGTTATCCTGCTCGAGTTGCTAACCGGCAAGAGCATAGAGAAGAGCCGGATTGATCTCGCGAGGTGGGTGAAATCTATGGTGAGGGAGGAATGGACCGGCGAGGTGTTCGATAAAGAGGTTAGGGCAACCGAGCATCAATGGGCTTTTCCTGTGTTGAATGTTGCCCTAACTTGTGTCTCAAGGTTCCAAGAAAATAGGCCAACCATGGGAGAGATCTTAGAGAGGATTGAGGGGGTTATGATTGAGCAAGAACAACAAGAACAACGAATTTCTTCAAAGTGTTGCTCCAATGGATCTAAAGATTGTTGCCCATTTCACAATATTATTCCTGATACATGGGATTCACCAGGATCCAATTACTGA 1701 0.3915 MFNLKKKNNNGVVIIRCNRNSTNIVVIRLENLNLSGTIDGDSLCKLQKLRVLSLANNNLKGEIPHSILHCTRLVYLNLSRNQLSGNVPKLKFLQKLDISNNNFNGVMISTNYVTPNIKDWRKGSIVNSSSPKPGVISSNDTLSKNGKEEKSSMMKFLIPLIIGAVVLVASLIFAAKKLPKLCREGVIKVLRSHQISPSLKSITSDLEKENNVSKKNKNNKKKGSLEDPSSPPSLGLVFFVEKDERFTMEDLLRAAADLRSESFSSSLYKVNIVENGAHYAVKRLKNVQVSSEDEFGETLKKISKLKHPNILPLVGYRSTNEEKLVIYKYQSNGSLLNLLNDYIAGRKHFPWKLRLSIACGIARGMAFIYSKKLNNNYKGEEDDSVIPHGNLKPSNILFNEKNEPLISEHGLTKFMDPNRSGFLLSSQGYAAPEKCLSEKADVYSFGVILLELLTGKSIEKSRIDLARWVKSMVREEWTGEVFDKEVRATEHQWAFPVLNVALTCVSRFQENRPTMGEILERIEGVMIEQEQQEQRISSKCCSNGSKDCCPFHNIIPDTWDSPGSNY 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241712g00018 566 ProSiteProfiles Protein kinase domain profile. 252 526 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241712g00018 566 MobiDBLite consensus disorder prediction 207 224 - -
Stsc241712g00018 566 Pfam Protein kinase domain 265 520 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241712g00018 566 PANTHER OS05G0588300 PROTEIN 15 107 - -
Stsc241712g00018 566 Pfam Leucine rich repeat 35 83 IPR001611 GO:0005515
Stsc241712g00018 566 Gene3D Ribonuclease Inhibitor 3 140 IPR032675 -
Stsc241712g00018 566 SUPERFAMILY Protein kinase-like (PK-like) 266 532 IPR011009 -
Stsc241712g00018 566 MobiDBLite consensus disorder prediction 206 231 - -
Stsc241712g00018 566 Gene3D Transferase(Phosphotransferase) domain 1 331 547 - -
Stsc241712g00018 566 ProSiteProfiles Leucine-rich repeat profile. 72 94 IPR001611 GO:0005515
Stsc241712g00018 566 Gene3D Phosphorylase Kinase; domain 1 231 329 - -
Stsc241712g00018 566 SUPERFAMILY L domain-like 9 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241712g00018 Stsc-Chr241712 107500 109951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241712g00018 20 529 Receptor kinase-like Gene Family AT2G36570 30.783 8.79e-66 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Stsc241712g00018 Pkinase 2e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241712g00018 - - gmx:100807491 655.595