Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241712g00016 ATGGAGTCTGCTGCTACTACTACTACCACTACCACTACCACCGCCTCGGACTCAGGCTCGGAGCACCACAACCGGGGCATTGAAGATCCGAATCGAAACGGGGCGGGTCGAAATGCATATGCTTCTGTTGGCGGGGCAAGGTACAAGCTGATGTCGCCGGCGAAGCTTCCGATCTCTCGGACGGCGTGCATAACGATACCACCGGGGCTGAGTCCGACGTCGTTTTTGGAGTCCCCTGTGCTCCTTTCTAACATGAAGGTAGAGCCTTCACCGACTACAGGATCCCTTCCAAGGATTCATCAAACAGCACATGGTTCTATGCTTTCTGCTGCATCGCCTGCATTTCCTATAACTTCTGTATGCTTCCATAATAATACTGTTGACGACAGAAAATTGAGCTTCTTCGAGTATAAACCGCCTGGTAGATCAAATATGGTTCCTTCAGATTTCAACAACCATGTAAGTGAACAGTCTACTCGAATAGAAGGTCCAGGAAAAGCTCAACCATTTGCATCTTCACCATTAGCCGAAAGTGAGACAGCAGATCCTTCTAACGAGTTAAGCCTATCATCGCCTGTTCAAAAGGTCAGTTCGGTTGAAGTTGACTTGGACGAGTTTAACCACAAAGGAAACGGAGCAACTGGGCTTCAGGCATCAGAAGTTGAGGCTAGAGGCAGTGGACCTCCAATCGTAGCCGAGAAGGTATCTGATGATGGTTACAATTGGCGAAAATATGGACAGAAACTTGTCAAAGGGAGTGAATTTCCGCGCAGCTATTACAAATGTACACATCCTAACTGTGAAGTGAAGAAACTGTTTGAACGCTCTCATGACGGTCAAATCACCGAGATAATATACAAGGGAACACACGATCACCCTAAACCTCAACCAAGCCGCCGATACTCTGCTGGTACCGGTATGTCTGTCCAAGAAGAGAGATCTGATAAGGCTTCTTTGGCAGGCCAAGATGACAGGGCATCCGGTATGTATGGTCGGGGATGTCATGCAGCTGATCCCAACGGTACTCCAGAGCTATCTCCTCGGGCAACAAACGACGACAGTCCAGAGGGTATTGGCTTGGCATCAAATAGGACTAATGATGAGATTGATGAAGATGATCCCATCTTGAAGAGAAGAAGAATGGAACTTGCAAATGCTGACATCACTCCTATTGTTAAGCCTATTCGGGAGCCAAGGGTTGTTGTACAAACTCTTAGTGAGGTTGATATTTTGGATGACGGGTACCGCTGGCGTAAGTATGGCCAGAAGGTGGTAAGAGGCAACCCTAACCCTAGGAGTTATTATAAGTGCACGAACAACGGTTGCCCTGTTAGGAAACACGTGGAGAGGGCATCTCATGATCCGAAAGCAGTAATAACCACATACGAGGGTAAGCACAATCACGATGTACCAGCCACAAGGACTAGTAGCCACGACATGGCAGGACCGGCTGCAGTGGCGGCCGCAGCTGCAGCAGCAATGGTTGGACATACAAGAATCAAGTTAGAAGAAAGCGATACCATTAGCCTTGACCTCGGTATGGGAATTAGCTCAGCAACTGAAAATAGATCAAAGGGCATTTCAGAATATGTGGAAAGCCAAACTCAAAGCCTAATTCACACCAACAACAACAATTTCAAGTTTGTTCATACTGCAACTCCATCTCCAGCATACTTTGGTGTTCTAAATCACAGCTCAATTTCTTATGGCTCTAGAGAAAATAGGAATGATGCTCCATCTTTAAACCATTCCTCATATCCTTGCTCACAGAACATGGGAAGAATACTAACTGGTCCATGA 1800 0.4689 MESAATTTTTTTTTASDSGSEHHNRGIEDPNRNGAGRNAYASVGGARYKLMSPAKLPISRTACITIPPGLSPTSFLESPVLLSNMKVEPSPTTGSLPRIHQTAHGSMLSAASPAFPITSVCFHNNTVDDRKLSFFEYKPPGRSNMVPSDFNNHVSEQSTRIEGPGKAQPFASSPLAESETADPSNELSLSSPVQKVSSVEVDLDEFNHKGNGATGLQASEVEARGSGPPIVAEKVSDDGYNWRKYGQKLVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQPSRRYSAGTGMSVQEERSDKASLAGQDDRASGMYGRGCHAADPNGTPELSPRATNDDSPEGIGLASNRTNDEIDEDDPILKRRRMELANADITPIVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNNGCPVRKHVERASHDPKAVITTYEGKHNHDVPATRTSSHDMAGPAAVAAAAAAAMVGHTRIKLEESDTISLDLGMGISSATENRSKGISEYVESQTQSLIHTNNNNFKFVHTATPSPAYFGVLNHSSISYGSRENRNDAPSLNHSSYPCSQNMGRILTGP 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241712g00016 599 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 115 514 IPR044810 GO:0003700
Stsc241712g00016 599 Gene3D WRKY domain 396 472 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc241712g00016 599 Gene3D WRKY domain 230 296 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc241712g00016 599 MobiDBLite consensus disorder prediction 1 20 - -
Stsc241712g00016 599 SMART WRKY_cls 411 470 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc241712g00016 599 SMART WRKY_cls 236 294 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc241712g00016 599 Pfam WRKY DNA -binding domain 237 293 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc241712g00016 599 Pfam WRKY DNA -binding domain 412 468 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc241712g00016 599 SUPERFAMILY WRKY DNA-binding domain 233 295 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc241712g00016 599 MobiDBLite consensus disorder prediction 146 162 - -
Stsc241712g00016 599 MobiDBLite consensus disorder prediction 572 599 - -
Stsc241712g00016 599 SUPERFAMILY WRKY DNA-binding domain 403 471 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc241712g00016 599 FunFam WRKY transcription factor 33 398 464 - -
Stsc241712g00016 599 ProSiteProfiles WRKY domain profile. 406 471 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc241712g00016 599 FunFam WRKY transcription factor 226 296 - -
Stsc241712g00016 599 MobiDBLite consensus disorder prediction 146 193 - -
Stsc241712g00016 599 MobiDBLite consensus disorder prediction 1 38 - -
Stsc241712g00016 599 MobiDBLite consensus disorder prediction 173 193 - -
Stsc241712g00016 599 MobiDBLite consensus disorder prediction 286 368 - -
Stsc241712g00016 599 ProSiteProfiles WRKY domain profile. 231 295 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241712g00016 Stsc-Chr241712 77916 83118 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241712g00016 51 599 WRKY Transcription Factor Family AT4G26640 55.615 0.0 540
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc241712g00016 WRKY 1.5e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241712g00016 - - gmx:100816583 876.315