Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241712g00014 ATGCAAACATCTCAGAATCATAAGAACATGTCCTACTCTTGCTACTTTCTTCCAAGTGAGAGCCTTAAAAATTACCCTTTACTTCATAATAATTCAGATCAATATTGCACCCTTGAATCTTCTTCTACCATTACCAATACTTTCCCCAACCAAAATTCTCCATCTTCTCTTAGTTTCTCACCTGAGAATAGTCCAATGTTGAAGCAACTCCGAGTCGAAACAACTGTGAATGGTTCACATGACAATGAATCTTGCTTGACACATGAGCAAGATGACTTGAGCAACAAGATAAGGGAATTGGAAAGTGTCATGCTAGGATCTGATGCAGATATTCTAAACACATATGGTGCTGCTATGATTCCACAAGAATGTGATGACTCATTCTTGTTGGAGGAAGAGAGATGGAGGAAAATGATGGAGGTGATTTCGCGAGGCGATTTGAAAGAGATGCTTTGTGCTTGTGCAAAAGCAATGTCAGAGAATGACATGGAGACAACTGAATGGCTGATGTCTGAGCTCCAAAAAATGGTGTCGATTTCGGGGAATCCGGTCCAAAGATTAGGAGCATACATGTTGGAGGCACTTGTAGCAAGGCTAGCCTCTTCAGGAAGCACAATTTACAATGCCTTGAGATGCAAGGAACCTACAGGCAATGAACTCCTTTCTTATATGCACATGCTTTATGAGATCTCTCCCTACCTCAAATTCGGCTATCTTTCTGCGAACGGATCGATAGCTGAAGCGATGAAGGGCGAAAATGAAGTTCACATAATTGATTTTCAGATTAACCAAGGAATTCAATGGATAAGCCTCATAAAAGCACTTGCTGGAAGGCCTAATGGAGCACCAAAGATCAGAATAACAGGTTTTGATGACTCTACCTCTGCTTTTGCCAGAGGAGGAGGACTTAACATAGTTGGAGAACGGTTAACAAGAATTGCAGATTCATGTAATGTTCAATTTGAATTCCATGCTGTTGGGGTTTCACCTTCTGAGGTGAAGCTTGATGATCTTGACATTAGGCCTGGTGAGGCTGTTGCTGTGAATTTCGCCATGATGCTTCACCATTTACCGGACGAAAGCGTGGACATTCGGGTAAATCATCGCGACCGGTTGTTAAGACTGGCCAAATTCTTGTCACCTAAGGTTGTTACCTTAGTTGAGCAAGATTCCAACACAAGTAACCTTCCTTTCTTCCCACGTTTCGTCGAAACAATGAACTACTACTTGGCTGTTTTCGAGTCGATCGATGCAGCTCTTCCAAGGGATCACAAAGAGAGGATCAATGTGGAACAGCACTGCCTTGCTAGAGAAGTTGTTAACCTGATAGCATGTGAAGGCGCAGAGAGAGTCGAACGCCACGAGGCTCTGAAGAAGTGGCGGTCGCGGTTCGCAAAGGCCGGATTCTCACCATATCCTTTGAGCTCTTATGTTACTTCTTTGATAAGGCAGCTTCAGGAAAGCTACCCTGGACAATACACTCTAGAAGAGAGAGATGGTTCTTTACTCCTTGGTTGGAAAAATCAATCTCTTGTTCTCTCTTGTGCTTGGAGATGA 1557 0.4303 MQTSQNHKNMSYSCYFLPSESLKNYPLLHNNSDQYCTLESSSTITNTFPNQNSPSSLSFSPENSPMLKQLRVETTVNGSHDNESCLTHEQDDLSNKIRELESVMLGSDADILNTYGAAMIPQECDDSFLLEEERWRKMMEVISRGDLKEMLCACAKAMSENDMETTEWLMSELQKMVSISGNPVQRLGAYMLEALVARLASSGSTIYNALRCKEPTGNELLSYMHMLYEISPYLKFGYLSANGSIAEAMKGENEVHIIDFQINQGIQWISLIKALAGRPNGAPKIRITGFDDSTSAFARGGGLNIVGERLTRIADSCNVQFEFHAVGVSPSEVKLDDLDIRPGEAVAVNFAMMLHHLPDESVDIRVNHRDRLLRLAKFLSPKVVTLVEQDSNTSNLPFFPRFVETMNYYLAVFESIDAALPRDHKERINVEQHCLAREVVNLIACEGAERVERHEALKKWRSRFAKAGFSPYPLSSYVTSLIRQLQESYPGQYTLEERDGSLLLGWKNQSLVLSCAWR 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241712g00014 518 Pfam GRAS domain family 148 518 IPR005202 -
Stsc241712g00014 518 ProSiteProfiles GRAS family profile. 138 518 IPR005202 -
Stsc241712g00014 518 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 100 511 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241712g00014 Stsc-Chr241712 70756 72573 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241712g00014 1 518 GRAS Transcription Factor Family AT1G50600 56.822 0.0 573
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Stsc241712g00014 GRAS 1.2e-129 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241712g00014 - - gmx:100817120 715.301