Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241712g00013 ATGTTGAAGCAACTCCGAGTCGAAACAACTGTGAATGGTTCACATGACAATGAATCTTGCTTGACACATGAGCAAGATGACTTGAGCAACAAGATAAGGGAATTGGAAAGTGTCATGCTAGGATCTGATGCAGATATTCTAAACACATATGGTGCTGCTATGATTCCACAAGAATGTGATGACTCATTCTTGTTGGAGGAAGAGAGATGGAGGAAAATGATGGAGGTGATTTCGCGAGGCGATTTGAAAGAGATGCTTTGTGCTTGTGCAAAAGCAATGTCAGAGAATGACATGGAGACAACTGAATGGCTGATGTCTGAGCTCCAAAAAATGGTGTCGATTTCGGGGAATCCGGTCCAAAGATTAGGAGCATACATGTTGGAGGCACTTGTAGCAAGGCTAGCCTCTTCAGGAAGCACAATTTACAATGCCTTGAGATGCAAGGAACCTACAGGCAATGAACTCCTTTCTTATATGCACATGCTTTATGAGATCTCTCCCTACCTCAAATTCGGCTATCTTTCTGCGAACGGATCGATAGCTGAAGCGATGAAGGGCGAAAATGAAGTTCACATAATTGATTTTCAGATTAACCAAGGAATTCAATGGATAAGCCTCATAAAAGCACTTGCTGGAAGGCCTAATGGAGCACCAAAGATCAGAATAACAGGTTTTGATGACTCTACCTCTGCTTTTGCCAGAGGAGGAGGACTTAACATAGTTGGAGAACGGTTAACAAGAATTGCAGATTCATGTAATGTTCAATTTGAATTCCATGCTGTTGGGGTTTCACCTTCTGAGGTGAAGCTTGATGATCTTGACATTAGGCCTGGTGAGGCTGTTGCTGTGAATTTCGCCATGATGCTTCACCATTTACCGGACGAAAGCGTGGACATTCGGGTAAATCATCGCGACCGGTTGTTAAGACTGGCCAAATTCTTGTCACCTAAGGTTGTTACCTTAGTTGAGCAAGATTCCAACACAAGTAACCTTCCTTTCTTCCCACGTTTCGTCGAAACAATGAACTACTACTTGGCTGTTTTCGAGTCGATCGATGCAGCTCTTCCAAGGGATCACAAAGAGAGGATCAATGTGGAACAGCACTGCCTTGCTAGAGAAGTTGTTAACCTGATAGCATGTGAAGGCGCAGAGAGAGTCGAACGCCACGAGGCTCTGAAGAAGTGGCGGTCGCGGTTCGCAAAGGCCGGATTCTCACCATATCCTTTGAGCTCTTATGTTACTTCTTTGATAAGGCAGCTTCAGGAAAGCTACCCTGGACAATACACTCTAGAAGAGAGAGATGGTTCTTTACTCCTTGGTTGGAAAAATCAATCTCTTGTTCTCTCTTGTGCTTGGAGATGA 1362 0.4405 MLKQLRVETTVNGSHDNESCLTHEQDDLSNKIRELESVMLGSDADILNTYGAAMIPQECDDSFLLEEERWRKMMEVISRGDLKEMLCACAKAMSENDMETTEWLMSELQKMVSISGNPVQRLGAYMLEALVARLASSGSTIYNALRCKEPTGNELLSYMHMLYEISPYLKFGYLSANGSIAEAMKGENEVHIIDFQINQGIQWISLIKALAGRPNGAPKIRITGFDDSTSAFARGGGLNIVGERLTRIADSCNVQFEFHAVGVSPSEVKLDDLDIRPGEAVAVNFAMMLHHLPDESVDIRVNHRDRLLRLAKFLSPKVVTLVEQDSNTSNLPFFPRFVETMNYYLAVFESIDAALPRDHKERINVEQHCLAREVVNLIACEGAERVERHEALKKWRSRFAKAGFSPYPLSSYVTSLIRQLQESYPGQYTLEERDGSLLLGWKNQSLVLSCAWR 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241712g00013 453 ProSiteProfiles GRAS family profile. 73 453 IPR005202 -
Stsc241712g00013 453 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 65 446 IPR005202 -
Stsc241712g00013 453 Pfam GRAS domain family 83 453 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241712g00013 Stsc-Chr241712 70011 72573 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241712g00013 8 453 GRAS Transcription Factor Family AT1G50600 62.416 0.0 566
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Stsc241712g00013 GRAS 7.4e-130 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241712g00013 - - gmx:100817120 685.641