Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241712g00011 ATGGCCTCCATTTTCTCTCTCTATCCATACAATCCCCTCCTCTATTCTTCTCCTTCTTCCCTGAGGAACTTTCTCGAATGCCACTTCAGTTCCAATTCCAATTCCAATTCTGCTTCTTCATCCTTTGACGGAAGAGCAGGAGGAGGAGGTGGTGGTGGTGGCAGTAAGGTGCTGCTTCTGGTTGCTGCGGCGCATTCCAATCCGAACATTCTCAAGACCAACCGCAAGTCTAAGTACGGTTACCCTCTCTCTACCTACGATTCCGACGATGAGGATGACGACGACGACGAAGATGACGATGACGATGACGATGATTGGCTCTCTGATGAAGAATTTGCTGAGCCTGCTCGCTTGGACACTAATGGCAAGAGATCTAAGTTGCATCCAATTAAAGGAAAAGAAAGACAAAATGAAAAGGAGTGGGGTGTAAGAGAGTTTGACAATGAACCAAGCACTAGAATGCGCGGAAGCAAGGGAGTGGCATCTCTACGGAAGAGCTACAATCGAAAGCTTGATGACTTAAAGGAGAAGAAGTATCCACGGCTGTCAGAAGAGATTATATTGGATTCGAGATGGTTACCGCTTCTTGATTACTTAAGCACCTTCGGAATCAAGGAGTCACACTTTATCCAGATGTATCAAAGGCACATGCCGTCACTTCAAATCAATGTATGCTCCGCACAGGAAAGGTTAGATTACTTGATGAGTGTCGGTGTCAAACATAGAGATGTTAGAAGAATCCTTGTGAGGCAGCCTCAGATTCTGGGGTACACGGTGGAGAACAATTTGAAGTCTCATGTTGCTTTCTTGACAGGCTTGGGAATACCAAGTTCCAGAGTAGGGCAAATCATTGCTGCTGCTCCATCACTTTTTTCTTATAGCGTAGAAAATTCATTAAAACCAACAGTAAGATATTTAGTTGAGCAAGTCGGGATCAAGGAAAAAGAGTTGGGTAAGGTCATTCAGCTAAGCCCACAAATTCTTGTCCAGCGCATTGATGTTTCATGGAATACTCGATATATGTTTCTAACCAAAGAGTTGGGAGCACCCAAAGATAGCATAGTGAAGATGGTGACGAAACATCCTCAGCTTCTCCACTACAGCATAGATGATGGATTACTTCCAAGGATAAACTTCCTAAGAAGCATAGGAATGAAAAATTCAGACATCTTGAAAGTATTGACTAGTCTTACGCAGGTGCTATCTCTGTCCCTAGAGGACAATCTGAAGCCCAAGTATTTGTACTTGGTAAATGAACTCAACAATGAGGTTCAATCCTTGACCAAATACCCAATGTATCTTAGCTTGTCTTTGGACCAAAGAATTCGTCCTCGTCATAGGTTCTTGGTTTCCTTGAAGAAAGCGCCAAAAGGACCGTTTCCACTTGGATCTCTTGTTCCAACTGATGAATGCTTTTGCCAACAGTGGGCTGGAACTAGTTTGGATAAATATTTGGCATTTCGTCAAAGATTATTAGTCAGAAGGTTTGCCGAGAAATTTGAAAGTAAAATGTGA 1515 0.431 MASIFSLYPYNPLLYSSPSSLRNFLECHFSSNSNSNSASSSFDGRAGGGGGGGGSKVLLLVAAAHSNPNILKTNRKSKYGYPLSTYDSDDEDDDDDEDDDDDDDDWLSDEEFAEPARLDTNGKRSKLHPIKGKERQNEKEWGVREFDNEPSTRMRGSKGVASLRKSYNRKLDDLKEKKYPRLSEEIILDSRWLPLLDYLSTFGIKESHFIQMYQRHMPSLQINVCSAQERLDYLMSVGVKHRDVRRILVRQPQILGYTVENNLKSHVAFLTGLGIPSSRVGQIIAAAPSLFSYSVENSLKPTVRYLVEQVGIKEKELGKVIQLSPQILVQRIDVSWNTRYMFLTKELGAPKDSIVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMKNSDILKVLTSLTQVLSLSLEDNLKPKYLYLVNELNNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGPFPLGSLVPTDECFCQQWAGTSLDKYLAFRQRLLVRRFAEKFESKM 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241712g00011 504 Gene3D Transcription termination factor 3, mitochondrial 261 491 IPR038538 -
Stsc241712g00011 504 Gene3D Transcription termination factor 3, mitochondrial 176 260 IPR038538 -
Stsc241712g00011 504 MobiDBLite consensus disorder prediction 86 110 - -
Stsc241712g00011 504 MobiDBLite consensus disorder prediction 111 141 - -
Stsc241712g00011 504 MobiDBLite consensus disorder prediction 72 141 - -
Stsc241712g00011 504 PANTHER CGI-12 PROTEIN-RELATED 173 278 IPR003690 GO:0003690|GO:0006355
Stsc241712g00011 504 FunFam Transcription termination factor MTERF9, chloroplastic 256 491 - -
Stsc241712g00011 504 Pfam mTERF 191 451 IPR003690 GO:0003690|GO:0006355
Stsc241712g00011 504 SMART mt_12 318 350 IPR003690 GO:0003690|GO:0006355
Stsc241712g00011 504 SMART mt_12 424 455 IPR003690 GO:0003690|GO:0006355
Stsc241712g00011 504 SMART mt_12 355 386 IPR003690 GO:0003690|GO:0006355
Stsc241712g00011 504 SMART mt_12 245 276 IPR003690 GO:0003690|GO:0006355
Stsc241712g00011 504 SMART mt_12 391 423 IPR003690 GO:0003690|GO:0006355
Stsc241712g00011 504 SMART mt_12 281 313 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241712g00011 Stsc-Chr241712 63237 66172 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Stsc241712g00011 mTERF 1.5e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241712g00011 K15031 - gmx:102660933 696.041