Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241711g00021 ATGGACCAAGATCTGCCGCTCCCTCAAGGAGCTGCCCGTCGTAGTCCTCTAATCCGGTCGTCGTCTCGTCCCGTCTCCAACTCATCTGGTTGCTGTCGTTCTTCAACTCACCTCTCTAGCGCCGTTCCTGTTGTCGTCAGGACTCGCAGTGCTCAGATCTGTACAGTTGTCATATCTACCTCAATCGCTGCTGGCTCTGGTCCAGTTGTCATGGACCTCGTTGGATTTACAACCATTGAGGAACACCATTATAGTCAACTACAAATTATTATTAGAGTCTACTACAGAAAAGGTGGTGGAGATTGGTTGCAGGAATCAAACGAAGGCATTGTTTGTGGCTTTAGCTTTTTCGTTGCAGGGCAAGCTCTCGTATACAAACTCCTATTTAGCTTCCTCAATTCTATGTGTCTCAAGTGGGCTATTGAGTTACGCATAGCAACCATAATCCACAACCATGGCAAACCCATCACTCTTCCTCACTTACTCTCAGCCCTGAATCTTCCACCCTCTAAAACTTGGGTGGTCCCGCGCTTCATGCGCTTTCTAGCGCACAATGGACTCTTTGCTATCGTAAGAGTCCACGACGACAACGACGACACAGAAGAAGAAGAAAAGGAAGCATATGCTCTAACCCCGGCCTCGGAGCTACTTGTTGAAGGCACTAACCATTGCTTATCCTCAATTCTTTTTGATGGTGCTCTTGCTGAGAAAATGATGGGTGCAACCCTTAGAATGGAAGAATGGATCCGCGGGGAAGAGAGCTCAGTGTTTGAGACTGCAGTTGGAGTTAGCTTTTGGGATTTGATTCATAAGGATCCCGAAATGATGAGGTCCTTCAATGAGTCCATGGCGGGTGATTCTCAAATGGTAAACGTGGCATTGAGAGATTGCGGTTTTGTGTTTGAAGGGATAGAATCTGTTGTGGATGTTGGTGGTGGAAATGGAACCACCGCCAAAATCATCTGTGAGGCATTTCCTGACTTGCAATTCACTGTTCTTGACCTTCCTCCAGTTGTTGCAAATTTCACAACAAGTGGGAATTTGAGATATGTTGGTGGTGACATGTTTGAATCAATTCCCCAAGCTCACGCAGTCTTACTTAAGTGGGTTCTACACGATTGGAATGATGAAGATTGCATCAAAATTTTAAAAAATTGCAAAAGATCTATATCAGAAAAAGGAAAAGTGATTATCATTGACGTAGTTATAAATAATGAAGAGCAAGATGAGGAGGACACAATGACCCCAATAAAACTTCTGTCTGATATAAACATGGTAGCTATGTTTGGTGCAAAAGAACGAAGTGAGAAAGAATGGAAACAACTCTTCATAGAAGCTGGATTCAACAATTACAAAATATTTCCCATATTTGGTTTTAGATCTCTTATAGAAGTCTATCCTTAG 1404 0.4352 MDQDLPLPQGAARRSPLIRSSSRPVSNSSGCCRSSTHLSSAVPVVVRTRSAQICTVVISTSIAAGSGPVVMDLVGFTTIEEHHYSQLQIIIRVYYRKGGGDWLQESNEGIVCGFSFFVAGQALVYKLLFSFLNSMCLKWAIELRIATIIHNHGKPITLPHLLSALNLPPSKTWVVPRFMRFLAHNGLFAIVRVHDDNDDTEEEEKEAYALTPASELLVEGTNHCLSSILFDGALAEKMMGATLRMEEWIRGEESSVFETAVGVSFWDLIHKDPEMMRSFNESMAGDSQMVNVALRDCGFVFEGIESVVDVGGGNGTTAKIICEAFPDLQFTVLDLPPVVANFTTSGNLRYVGGDMFESIPQAHAVLLKWVLHDWNDEDCIKILKNCKRSISEKGKVIIIDVVINNEEQDEEDTMTPIKLLSDINMVAMFGAKERSEKEWKQLFIEAGFNNYKIFPIFGFRSLIEVYP 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241711g00021 467 MobiDBLite consensus disorder prediction 15 35 - -
Stsc241711g00021 467 Gene3D - 116 217 IPR036388 -
Stsc241711g00021 467 Gene3D Vaccinia Virus protein VP39 222 467 IPR029063 -
Stsc241711g00021 467 SUPERFAMILY "Winged helix" DNA-binding domain 119 220 IPR036390 -
Stsc241711g00021 467 FunFam Coniferyl alcohol 9-O-methyltransferase 115 217 - -
Stsc241711g00021 467 FunFam O-methyltransferase ZRP4 220 467 - -
Stsc241711g00021 467 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 234 466 IPR029063 -
Stsc241711g00021 467 CDD AdoMet_MTases 307 403 - -
Stsc241711g00021 467 Pfam Dimerisation domain 135 183 IPR012967 GO:0046983
Stsc241711g00021 467 PANTHER O-METHYLTRANSFERASE 124 452 IPR016461 GO:0008168
Stsc241711g00021 467 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 125 467 IPR016461 GO:0008168
Stsc241711g00021 467 Pfam O-methyltransferase domain 246 449 IPR001077 GO:0008171
Stsc241711g00021 467 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241711g00021 Stsc-Chr241711 155685 159100 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241711g00021 155 467 Monolignol Biosynthesis Gene Families AT1G51990 31.546 3.23e-45 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241711g00021 K22588 - gmx:100818724 386.726