Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241709g00012 ATGTCTTCTGCTCATCATTCTGCTTTATCCGCCATGGCCATTGAACCTTCGTCTGCGCCCGCCGCCGCTTCCTCTGCAACCGGCAATGATGGATTTCAAAGCAAACAAAGAGAGCATGAAGCGAAGCAGAGATCCATAATAAGGTCTCTAAGGAGACTAACTGCCCTCTCAACTGGCTCAATTCCAGATGTGGAACCTCCAACAAGAACTGAGGATGTCTGTGTATCTACATCTACTACTACAAAGAGTTGGCCAAGTCCAAGAACCGCAACCTCTTCTTCTTCTTCCAACAACGTCAGCCCCAAGGTTACCAGCCCCAACGTTGTCAGCCCCAAAGTAGTCAGCCCCAAGGTCGTTAGCCCTTCTAACTCAGGGGAGCAGCAGGATTTAAAAGGCAACAATAACAATAACAATAATTGGAATGGCATTGTTAGTATTCTGAAGAAAGGATCCCAGATGCCCCTCCATACCTTAAGCACAATCAAGGATGTTCCATATTTCAAAAGGAGAACAAACGAACGAATACCAGAGGAATTCAGTGCAATGATCAAACCAGGAACATCTCTTAATCCTGAGGCTTATCGCTTTAAATCCTCCTGGAAAGTATTCTCTCTCTCGGATATCCATGCCGCCACCAACAATTTCAGCCGTGAGAATTTGATTGGGCAAGGAGGTTATGCTGAGGTTTACAAAGGCCAATTGGAAGATGGAAACTTTGTAGCAATTAAAAGGTTAACAAGAGGGGACCAAGAAGAAATGACCTCAGATTTTTTGTCTGAGCTTGGGATTATAGTGCATGTGGATCACCCCAATATTGCTAAATTGATTGGATATGGAGTTGAAGGTGGAATGCATCTTGTTCTTCAGTTGTCTCCACATGGCAGCCTAGCTTCCATACTTTATGGACCCAGAGAGAAACTGGATTGGAGCACCAGGTATAAGATTGCAGTGGGGACTGCTGAGGGCCTCTACTATCTGCATCAACAATGTCAAAGAAGGATCATTCATAGAGATATCAAAGCTGCTAACATATTGCTTTCAGAGGATTTTGAGCCACAGATAGCTGATTTTGGACTATCCAAATGGTTACCTGAGAAATGGACTCACCATACTGTCTCCAAAGTAGAAGGCACATTCGGTTACCTTCCTCCTGAATACTTCATGCATGGTATTGTTGATGAAAAAACTGATGTTTTTGCTTATGGAGTGTTATTATTGGAGCTCATTACCGGTCGTCCGGCACTGGACAGTGCTCAGAAAAGTCTTGTGATGTGGGCAAAACCACGGATATCCCAGATCAAAATGGACGAGCTTATTGATCCATGTCTTGCTGGTGCCTATGATGAAGAACAGATGAAATATATAATCTTAACAGCTGCTTTGTGCATAGAGGAGTCCACGATTCGACCGCGAATGCACCATGTTTTGCAGATATCAAAAGGGGAAGAAGGCAGCATGGAGTTAGCTAGGGAACTCATGGAACCTTTATCTGGTGATGATTACATTGAAGAAGAGTTTCCCTCACCTCACACTTCCAATGACATATCCAAACTTTTGGAGACTCTTGAACAAGATTAA 1578 0.4373 MSSAHHSALSAMAIEPSSAPAAASSATGNDGFQSKQREHEAKQRSIIRSLRRLTALSTGSIPDVEPPTRTEDVCVSTSTTTKSWPSPRTATSSSSSNNVSPKVTSPNVVSPKVVSPKVVSPSNSGEQQDLKGNNNNNNNWNGIVSILKKGSQMPLHTLSTIKDVPYFKRRTNERIPEEFSAMIKPGTSLNPEAYRFKSSWKVFSLSDIHAATNNFSRENLIGQGGYAEVYKGQLEDGNFVAIKRLTRGDQEEMTSDFLSELGIIVHVDHPNIAKLIGYGVEGGMHLVLQLSPHGSLASILYGPREKLDWSTRYKIAVGTAEGLYYLHQQCQRRIIHRDIKAANILLSEDFEPQIADFGLSKWLPEKWTHHTVSKVEGTFGYLPPEYFMHGIVDEKTDVFAYGVLLLELITGRPALDSAQKSLVMWAKPRISQIKMDELIDPCLAGAYDEEQMKYIILTAALCIEESTIRPRMHHVLQISKGEEGSMELARELMEPLSGDDYIEEEFPSPHTSNDISKLLETLEQD 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241709g00012 525 MobiDBLite consensus disorder prediction 1 138 - -
Stsc241709g00012 525 ProSitePatterns Serine/Threonine protein kinases active-site signature. 334 346 IPR008271 GO:0004672|GO:0006468
Stsc241709g00012 525 MobiDBLite consensus disorder prediction 33 47 - -
Stsc241709g00012 525 MobiDBLite consensus disorder prediction 71 138 - -
Stsc241709g00012 525 ProSitePatterns Protein kinases ATP-binding region signature. 221 243 IPR017441 GO:0005524
Stsc241709g00012 525 Pfam Protein kinase domain 216 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241709g00012 525 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 292 493 - -
Stsc241709g00012 525 MobiDBLite consensus disorder prediction 50 64 - -
Stsc241709g00012 525 SUPERFAMILY Protein kinase-like (PK-like) 195 477 IPR011009 -
Stsc241709g00012 525 ProSiteProfiles Protein kinase domain profile. 215 525 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241709g00012 525 Gene3D Transferase(Phosphotransferase) domain 1 292 493 - -
Stsc241709g00012 525 PANTHER OS08G0249100 PROTEIN 57 488 IPR046958 -
Stsc241709g00012 525 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK2 186 289 - -
Stsc241709g00012 525 SMART serkin_6 215 455 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241709g00012 525 Gene3D Phosphorylase Kinase; domain 1 182 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241709g00012 Stsc-Chr241709 62191 64676 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241709g00012 198 479 Trihelix Transcription Factor Family AT1G68690 42.905 4.56e-68 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Stsc241709g00012 Pkinase 5.6e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241709g00012 - - lja:Lj6g3v1915960.1 528.094