Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241709g00007 ATGGCTAGGTACCGAAGCCGGAGCAGAAGCTACAGCCCTCGCCGCCGTAGCAGAACACCGCCGCGCGAACGCAAGCGCTACGACGACGATCGCCACGGCGACAGCAGATCCTACAGGGACCGCCGCTCTCCACTCCCTTCTGGCCTTCTTGTTCGTAATCTCCCCCTTGATGCTAGGCCTGAAGATCTTAGGGTTCCATTCGAGCGCTTTGGACCTGTGAAGGATGTTTATCTTCCTAAGAATTATTACACTGGTGAGCCTCGAGGATTTGGGTTTGTGAAGTATCGATATGGTGAAGATGCAGCTGAGGCAAAGCAACAACTGAATCATACCACTATTGGAGGGCGTGAAATAAGAATTGTGTTTGCCGAGGAAAACAGGAAAACCCCTCAGGAGATGCGTGTCATTTCTCGGGGAAGTAGCCGACATGGAGGTAGCAGGAGGAGGAATCGGTCAAGGTCCCCAAGACGCCGATATAGATCTTATTCTCGGTCTCCAACACCAGCCCGGGATGATTCAAGGAGTGGCAGGGGCAAGGGAAGGGATAAGGAAGATTACTATTCTCCTGAGCGATCAAGATCTTATTCTAGGTCACGCTCTCCTAGTGATGGGAAGGACTACAGGAGGTCTCCACATCCCAGGTCTCGCTCTCCTAGTGATGTAAAGGACTATAGGAGGTCTCGCTCTCCTACTGATGGGAAGGGCTACAGGAGGTCCCCACATCCAAGGTCTCGCTCTCCTAGAGCTGAGAAGGATGACAGGAGGTCTCCAAATCCCAGGGAGAATGGTGGTAGTCCTAATGAGAAGAGGGGTCGTTCACCTAGCAGATCAAAGAGTCCTAGGGGTAATGGCCGCAGTCCTTCTAGATCTCGTTCGCGATCATACAGTCCGCGCTGA 897 0.5284 MARYRSRSRSYSPRRRSRTPPRERKRYDDDRHGDSRSYRDRRSPLPSGLLVRNLPLDARPEDLRVPFERFGPVKDVYLPKNYYTGEPRGFGFVKYRYGEDAAEAKQQLNHTTIGGREIRIVFAEENRKTPQEMRVISRGSSRHGGSRRRNRSRSPRRRYRSYSRSPTPARDDSRSGRGKGRDKEDYYSPERSRSYSRSRSPSDGKDYRRSPHPRSRSPSDVKDYRRSRSPTDGKGYRRSPHPRSRSPRAEKDDRRSPNPRENGGSPNEKRGRSPSRSKSPRGNGRSPSRSRSRSYSPR 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241709g00007 298 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 48 226 - -
Stsc241709g00007 298 MobiDBLite consensus disorder prediction 164 275 - -
Stsc241709g00007 298 SMART rrm2_1 48 121 IPR003954 GO:0003676
Stsc241709g00007 298 MobiDBLite consensus disorder prediction 141 160 - -
Stsc241709g00007 298 MobiDBLite consensus disorder prediction 277 298 - -
Stsc241709g00007 298 SUPERFAMILY RNA-binding domain, RBD 49 154 IPR035979 GO:0003676
Stsc241709g00007 298 SMART rrm1_1 48 121 IPR000504 GO:0003723
Stsc241709g00007 298 MobiDBLite consensus disorder prediction 22 41 - -
Stsc241709g00007 298 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 49 119 IPR000504 GO:0003723
Stsc241709g00007 298 MobiDBLite consensus disorder prediction 1 46 - -
Stsc241709g00007 298 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 47 125 IPR000504 GO:0003723
Stsc241709g00007 298 MobiDBLite consensus disorder prediction 1 21 - -
Stsc241709g00007 298 MobiDBLite consensus disorder prediction 124 298 - -
Stsc241709g00007 298 ProSitePatterns Protamine P1 signature. 2 12 IPR000221 GO:0000786|GO:0003677|GO:0005634|GO:0007283|GO:0035092
Stsc241709g00007 298 Gene3D - 2 135 IPR012677 -
Stsc241709g00007 298 FunFam Serine/arginine-rich SC35-like splicing factor SCL28 2 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241709g00007 Stsc-Chr241709 37036 40999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241709g00007 51 109 Eukaryotic Initiation Factors Gene Family AT3G11400 45.763 5.37e-07 48.5