Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241708g00015 ATGTCTCCGCCGGCGCTGGTTTCCGAGGACGAAGGGCAGGGCAACGTCTCGACGGTAGCTTCCGCATCTTCGCAATCCCTAGACTGTTTCTCCCAGAATGGGGGTGGAGGGTTGAAAGAACGGAATTACCTTGGGTTGTCTGATTGCTCTTCAGTGGATAGCTCCAATTCTTCTGTCCCAAGCTTGTCTGATGAGAAGAAGGGCAACCTGAATTTGAAGGCTACTGAATTGAGGCTGGGACTCCCTGGATCCCAGTCGCCCGAAAGGGATCCGGAGGTAGATATGTTCTCTTTGAGCTCATCAAAGCCTGATGAGAAGCCTTTGTTTCCTTTGCTTCCTATGAAAGATGGTATCTGCTCGGCGTCCCAGAAGAATGCTGTGGTGTTGGGAAACAAAAGGGGTTTTGCTGATACCATAGATGGCTTTTCTCAGGGGAAGTTTGCTGGTAATACAGGGATAACTGCAATGTTATCACCTAGACCTTCTGGTGCGCAGCCTACGGCATCGAAGGAAATGGCGAACAAGGTGTTACAAGAACAGCCTTGTGCAGCTAATGGAACTGGTCAAACTAGCCATACAGGCCCTTCTGTCAGTGGCAGTGCCCCAGCTTCTAAGGCACAGGTGGTTGGTTGGCCTCCTATAAGATCATTTAGGAGAAATTCAATGGCAACCGCATCAAAGAACAATGATGAAGTGGATGGAAAACCTGGTTTGGCCGCACTCTTTGTGAAGGTCAGCATGGATGGTGCTCCCTATCTCAGGAAGGTGGATCTCAGAAGTTATACATCTTATCAGGAACTATCTTCTGCCCTTGAGAAGATGTTCACTTGTTTTACACTGGGTCAGTGTGGCTCCCATGGAGCTCCAGGAAGAGAAATATTGAGTGAAAGCAAGCTGAGGGACCTTCTGCATGGTTCAGAGTATGTCCTCACTTACGAGGATAAAGAAGGGGATTGGATGCTTGTAGGGGACGTACCTTGGGAGATGTTCACCGACACTTGCAAAAGGCTGAAAATCATGAAGGGTTCTGATGCAATTGGTTTGGCTCCCAGGGTCATGGAGAAGTCCAAGAGCAGGTGTTAG 1083 0.4903 MSPPALVSEDEGQGNVSTVASASSQSLDCFSQNGGGGLKERNYLGLSDCSSVDSSNSSVPSLSDEKKGNLNLKATELRLGLPGSQSPERDPEVDMFSLSSSKPDEKPLFPLLPMKDGICSASQKNAVVLGNKRGFADTIDGFSQGKFAGNTGITAMLSPRPSGAQPTASKEMANKVLQEQPCAANGTGQTSHTGPSVSGSAPASKAQVVGWPPIRSFRRNSMATASKNNDEVDGKPGLAALFVKVSMDGAPYLRKVDLRSYTSYQELSSALEKMFTCFTLGQCGSHGAPGREILSESKLRDLLHGSEYVLTYEDKEGDWMLVGDVPWEMFTDTCKRLKIMKGSDAIGLAPRVMEKSKSRC 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241708g00015 360 MobiDBLite consensus disorder prediction 11 31 - -
Stsc241708g00015 360 FunFam Auxin-responsive protein 235 352 - -
Stsc241708g00015 360 Gene3D - 237 354 - -
Stsc241708g00015 360 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 70 347 IPR003311 GO:0005634|GO:0006355
Stsc241708g00015 360 MobiDBLite consensus disorder prediction 1 31 - -
Stsc241708g00015 360 MobiDBLite consensus disorder prediction 49 65 - -
Stsc241708g00015 360 Pfam AUX/IAA family 75 351 IPR033389 -
Stsc241708g00015 360 MobiDBLite consensus disorder prediction 49 101 - -
Stsc241708g00015 360 MobiDBLite consensus disorder prediction 183 206 - -
Stsc241708g00015 360 MobiDBLite consensus disorder prediction 183 203 - -
Stsc241708g00015 360 ProSiteProfiles PB1 domain profile. 240 344 IPR000270 GO:0005515
Stsc241708g00015 360 SUPERFAMILY CAD & PB1 domains 240 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241708g00015 Stsc-Chr241708 138969 142324 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241708g00015 244 350 B3 DNA Binding Superfamily AT4G23980 31.776 1.03e-08 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Stsc241708g00015 AUX_IAA 1.8e-89 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241708g00015 K14484 - gmx:547502 561.607