Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241705g00018 ATGACGAAAATAGCTCTAGGAACCACCCGAGAGGCAACCCAACCCGATTGCATTCGAGCCCTCATTGTCGAGTTCATAGCCACCTTCCTCTTTGTCTTCACCGGCGTTGCTTCAGCCATGGCCGCTGAAAAGCTTAGCAGTGGAGATGCACTATTGCGGTTGGTTGCTGTGGCCGTGGCAAGTGCATTCGTGGTGGCGGTAATGATTTCAGCCGGTCACATATCCGGCGGTCACCTGAACCCTGCCGTGACGCTTGGGCTCCTGGTTGGCGGGCACATCACGGTGGTCCGATCGGTCCTTTATTGGATAGATCAGTTGGTAGCATCTGCAGCTGCTTCTTACCTTCTTTGCTACCTTTCCGGGGGAATGGCAATTCCAGTTCATACTCTAGCAAGTGGAGTTGGGTATACTCAAGGAGTAATTTGGGAGATAGTGTTGACTTTCTCATTATTATTTGCGGTCTATGGAACTATGGTTGACCCCAAAAAGGGAGTAGCCACTGGGCATGGGCCCACAATAATTGGGTTTGTAGTTGGGGCCAATATTCTCGCTGGTGGGGCCTTCTCTGCGGCCTCAATGAACCCAGCAAGGTCGTTTGGGCCCGCATTGGTTATGGGTAACTGGACCGGTCATTGGGTTTATTGGGTTGGGCCTCTTATTGGTGGAGGCCTTGCTGGTTTCTTCTATGAGCATCTTTTCATTGACCGTACCCATACTCTACTCTCTCGTGATGAAGAAAATTAA 744 0.5094 MTKIALGTTREATQPDCIRALIVEFIATFLFVFTGVASAMAAEKLSSGDALLRLVAVAVASAFVVAVMISAGHISGGHLNPAVTLGLLVGGHITVVRSVLYWIDQLVASAAASYLLCYLSGGMAIPVHTLASGVGYTQGVIWEIVLTFSLLFAVYGTMVDPKKGVATGHGPTIIGFVVGANILAGGAFSAASMNPARSFGPALVMGNWTGHWVYWVGPLIGGGLAGFFYEHLFIDRTHTLLSRDEEN 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241705g00018 247 PRINTS Major intrinsic protein family signature 60 84 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc241705g00018 247 PRINTS Major intrinsic protein family signature 175 197 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc241705g00018 247 PRINTS Major intrinsic protein family signature 142 160 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc241705g00018 247 PRINTS Major intrinsic protein family signature 212 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc241705g00018 247 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc241705g00018 247 PRINTS Major intrinsic protein family signature 97 116 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc241705g00018 247 SUPERFAMILY Aquaporin-like 11 240 IPR023271 -
Stsc241705g00018 247 Gene3D Glycerol uptake facilitator protein. 2 244 IPR023271 -
Stsc241705g00018 247 Pfam Major intrinsic protein 12 229 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc241705g00018 247 ProSitePatterns MIP family signature. 78 86 IPR022357 -
Stsc241705g00018 247 PANTHER AQUAPORIN-8 4 237 IPR034294 -
Stsc241705g00018 247 FunFam Probable aquaporin TIP1-1 2 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241705g00018 Stsc-Chr241705 140922 143482 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241705g00018 1 246 Major Intrinsic Protein MIP AT2G25810 74.797 1.85e-122 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241705g00018 K09873 - gmx:100793258 384.03