Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241705g00011 ATGATCATTATTAAGAACCGTTTGTTCATATTCATGTCCACATACATCATCATGATTATGCTTTCTCTCCTTTTCAGTGTTGTTCATGCCCAAAACAACGATGAAGACATGGCACCTACTGACATGTCTGATGATAATGTGCATCCAAGCAAGGCTCTTGTTATTTCGGTCCTCATCGTAATGTTCACCATAACATTCCTCTTACTCGCATATGTTCGTTTCTGCAAACTCCATGCCGTTGGGCTTCAGCCCAACGGCATCCAAGGTCGTACCTTGACCCGAAACGAGTCAAGATTCTCCGGGATCAATAGGGAAATCATCGAAAAACTCCCATTCTTTCGATTCTCTTCCCTCAAGGGCTCCAAAGAAGGTTTAGAATGTACCGTTTGCCTCTCGAGATTCGAGGATTCCGAGGTTCTGAGGCTACTCCCAAAGTGCCAACACGCTTTCCACATTAATTGTATTGACAAGTGGCTCGAAAGCCACTCCACTTGTCCTCTTTGTAGGTACAGGGTGGAACCTGGAGATATCAAGAGTCACACATACTCTGTTAGCTCCAGGTCCCTCCGTGTACCTTCAAACTTAACGGAAGAACCAAATCTCGAGATCTACGTCCAAAGGGAACCGTCACATCGACGGTCATCGAGGTTCGGCCTCGGAACCGGGTTCTTGGAATTCAACAGAAGCAAGAAACAAGAACAACAAGGTAGTAGCAGTAGCAATAAGAAAGACATGAATAAGAATAACCACAATTTCAACCACAGAATAGTGATATCTGATGTCGTAACAAGAAGTCGGTGGAGCGATCTAAACTCTTCGGATTTGCTATCGCTGAGCATGGAGATGCTGAGCGATGCTTCCAGCGCGAGATTCTCGGCGGAAAAGATTGTTCATCATCAAGGGGATTATTCAGTTAGCGTTGATGATGATGAAGAAGAAGAAGAGCATTCATTCACAGCACTGAATAGTGGTAAGAATAAGGATTGTTGTGGGGAGAAGAGGTCAATGTCTGAGATTGCAAATGTTCCAAGGTTTGCAGGGATGATGACGATGAGAAAGCAGAACAGTAATGGTGGTGGTGGTGGTGTTGGAAGGGAAGAAGAAGAAGAAAGGTTCTTGAGGATTTGGATGCCAATTGCTCGTAGAACGGTTCAGTGGTTTGCAAGAAGACAAAGAAACGATGATGATCATCATCATGATGACGATGGTGATCAATTAAATAGACACGAGCGTTTAGGATCAAATGTTTGA 1251 0.4404 MIIIKNRLFIFMSTYIIMIMLSLLFSVVHAQNNDEDMAPTDMSDDNVHPSKALVISVLIVMFTITFLLLAYVRFCKLHAVGLQPNGIQGRTLTRNESRFSGINREIIEKLPFFRFSSLKGSKEGLECTVCLSRFEDSEVLRLLPKCQHAFHINCIDKWLESHSTCPLCRYRVEPGDIKSHTYSVSSRSLRVPSNLTEEPNLEIYVQREPSHRRSSRFGLGTGFLEFNRSKKQEQQGSSSSNKKDMNKNNHNFNHRIVISDVVTRSRWSDLNSSDLLSLSMEMLSDASSARFSAEKIVHHQGDYSVSVDDDEEEEEHSFTALNSGKNKDCCGEKRSMSEIANVPRFAGMMTMRKQNSNGGGGGVGREEEEERFLRIWMPIARRTVQWFARRQRNDDDHHHDDDGDQLNRHERLGSNV 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241705g00011 416 CDD RING-H2_EL5-like 126 169 - -
Stsc241705g00011 416 ProSiteProfiles Zinc finger RING-type profile. 127 169 IPR001841 -
Stsc241705g00011 416 SUPERFAMILY RING/U-box 106 174 - -
Stsc241705g00011 416 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 176 IPR013083 -
Stsc241705g00011 416 MobiDBLite consensus disorder prediction 393 416 - -
Stsc241705g00011 416 MobiDBLite consensus disorder prediction 228 251 - -
Stsc241705g00011 416 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 28 392 - -
Stsc241705g00011 416 SMART ring_2 127 168 IPR001841 -
Stsc241705g00011 416 FunFam RING-H2 finger protein ATL43 102 176 - -
Stsc241705g00011 416 Pfam Ring finger domain 126 169 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241705g00011 Stsc-Chr241705 80924 82453 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241705g00011 43 395 C3H Transcription Factor Family AT2G20030 41.803 3.62e-77 243