Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241704g00007 ATGCCACTGGGAGACGGCAACACTGGCTTGAGGCGCAGAGGAGCTCAGAGACGAAATAGATCTAGCGACAAGGCTGTACAACGAGGCTGCATGCAGATGGCTCAAGCACACAAGCATACCGAAGATGAAGCAAAGGAAGCCTCAGCAAATTATAATTTTCAGGATGGAGTGAGTGAATCACAGTTCATCAAGGTGTTAAATGAAGAGTTGGTTCCAATCATAGAGGCATGCAAATATCTTGATGAGAAGTGGTGTCCCAAGTTCACTTTTATTGTTGCTCAGAAGAATCATCATAGCAAATTGTTTAAGGACAATGCCCCAGATAATGTTCCACCAGATCTTACCATATAA 351 0.4359 MPLGDGNTGLRRRGAQRRNRSSDKAVQRGCMQMAQAHKHTEDEAKEASANYNFQDGVSESQFIKVLNEELVPIIEACKYLDEKWCPKFTFIVAQKNHHSKLFKDNAPDNVPPDLTI 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241704g00007 116 SUPERFAMILY Ribonuclease H-like 53 112 IPR012337 -
Stsc241704g00007 116 Gene3D - 14 116 IPR036397 GO:0003676
Stsc241704g00007 116 ProSiteProfiles Piwi domain profile. 53 116 IPR003165 GO:0003676
Stsc241704g00007 116 MobiDBLite consensus disorder prediction 1 47 - -
Stsc241704g00007 116 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 52 113 - -
Stsc241704g00007 116 Pfam Piwi domain 53 112 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241704g00007 Stsc-Chr241704 59175 59930 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241704g00007 53 108 Eukaryotic Initiation Factors Gene Family AT5G43810 50.000 1.39e-11 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241704g00007 K11593 - twl:120001680 103.99